Browse Element(s) Details


OsAffx.22712.1.S1_at

Description tigr:9631.m03525
TID=OsAffx.22712.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22712.1.S1_at--580--511Chr03:20389548..20389572 (25 bp)
ATCGAGCTAGATGTGGTAGCAAAGC
LOC_Os03g36810
OsAffx.22712.1.S1_at--152--3711Chr03:20389554..20389578 (25 bp)
CTAGATGTGGTAGCAAAGCACGGAG
LOC_Os03g36810
OsAffx.22712.1.S1_at--929--8531Chr03:20389580..20389604 (25 bp)
TGGAGCAGACTGTGGCCCTGACGGG
LOC_Os03g36810
OsAffx.22712.1.S1_at--688--8511Chr03:20389612..20389636 (25 bp)
TGGAAGGGTCAGTGCCTCGTGACAA
LOC_Os03g36810
OsAffx.22712.1.S1_at--303--2891Chr03:20389615..20389639 (25 bp)
AAGGGTCAGTGCCTCGTGACAACCG
LOC_Os03g36810
OsAffx.22712.1.S1_at--362--1131Chr03:20389622..20389646 (25 bp)
AGTGCCTCGTGACAACCGCAATGGA
LOC_Os03g36810
OsAffx.22712.1.S1_at--329--4471Chr03:20389625..20389649 (25 bp)
GCCTCGTGACAACCGCAATGGATCG
LOC_Os03g36810
OsAffx.22712.1.S1_at--987--5611Chr03:20389632..20389656 (25 bp)
GACAACCGCAATGGATCGGCGGCGT
LOC_Os03g36810
OsAffx.22712.1.S1_at--789--1791Chr03:20389636..20389660 (25 bp)
ACCGCAATGGATCGGCGGCGTCCAC
LOC_Os03g36810
OsAffx.22712.1.S1_at--968--4651Chr03:20389653..20389677 (25 bp)
GCGTCCACATCGAGGCAGGCGTCGC
LOC_Os03g36810
OsAffx.22712.1.S1_at--831--5952Chr03:20390038..20390062 (25 bp)
GAGCAATCTGAGAGGCGTGATTTTC
LOC_Os03g36810
Target Sequence 
ATCGAGCTAGATGTGGTAGCAAAGCACGGAGGTGGAGCAGACTGTGGCCCTGACGGGGTTGCCGTGGAAGGGTCAGTGCC
TCGTGACAACCGCAATGGATCGGCGGCGTCCACATCGAGGCAGGCGTCGCGGGTCCAGAGGGGATCCCGCAGGCGAGGCG
GCAAGGGAGGAGATCGCGCGACCGGCGGCGCGATTAGGGTTAGGGGAGGCAATGGCATGGTGAGAGGGATGCGGGAAGGG
GCGCCGTCGCGCTGGCAGCGTCGATCGGTGGGGCGTCGTGAGAGCGCGAGGGAGGAGGAGCAATCTGAGAGGCGTGATTT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis