Browse Element(s) Details


OsAffx.22864.1.S1_x_at

Description gb:NM_183888.1
DB_XREF= gi:34894903
GEN=B1140D12.18
TID=OsAffx.22864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1140D12.18 (B1140D12.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23020NANA1+12932851..12939580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23040Os.53142.1.S1_at3/111+12945131..12951397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23050Os.27691.2.S1_x_at1/111+12954181..12955005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23060NANA1+12957006..12957209hypothetical protein
LOC_Os01g23070OsAffx.22864.1.S1_x_at11/111+12963066..12965262hypothetical protein
LOC_Os01g23080OsAffx.10661.1.S1_s_at11/111+12971980..12972822hypothetical protein
LOC_Os01g23090NANA1+12973948..12977270retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23100OsAffx.2060.1.S1_at11/111+12979182..12980600hypothetical protein
LOC_Os01g23110NANA1+12981462..12982079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_at3/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_x_at2/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23130OsAffx.8908.1.S1_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.8908.1.S1_x_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.19407.1.S1_at2/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.7337.1.S1_at1/111+12987652..12992131transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22864.1.S1_x_at--433--10651Chr01:12964668..12964692 (25 bp)
TTCCCTGAGACGGTTCCAGTTCGAG
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--656--1211Chr01:12964691..12964715 (25 bp)
AGTTCGACACCGTCACCGACAAGAT
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--1161--2791Chr01:12964711..12964735 (25 bp)
AAGATCCTCGCTTGGCACGTTGCAA
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--382--1891Chr01:12964727..12964751 (25 bp)
ACGTTGCAACTAGGCTCTTCGAGAT
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--876--10591Chr01:12964744..12964768 (25 bp)
TTCGAGATAACTCACGCGCGTACTT
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--826--4551Chr01:12964759..12964783 (25 bp)
GCGCGTACTTCACCGGACAACAAGA
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--1150--8131Chr01:12964773..12964797 (25 bp)
GGACAACAAGATCGTCGCCTGCCAT
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--778--4431Chr01:12964793..12964817 (25 bp)
GCCATCTGTCGTACTACTGCGCGTA
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--190--8131Chr01:12964848..12964872 (25 bp)
GGACTGCCCTGCGTGGACCCAAAAA
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--1059--1231Chr01:12965063..12965087 (25 bp)
AGTTGGCGTGGCAGTTCCTTGCGAA
LOC_Os01g23070
OsAffx.22864.1.S1_x_at--915--1231Chr01:12965075..12965099 (25 bp)
AGTTCCTTGCGAATTTCTGGTCGGA
LOC_Os01g23070
Target Sequence 
TTCCCTGAGACGGTTCCAGTTCGAGTTCGACACCGTCACCGACAAGATCCTCGCTTGGCACGTTGCAACTAGGCTCTTCG
AGATAACTCACGCGCGTACTTCACCGGACAACAAGATCGTCGCCTGCCATCTGTCGTACTACTGCGCGTACCTGGTGGCG
GCCGTGCCGGAGCTGCTTCCGGACTGCCCTGCGTGGACCCAAAAACGGTACAAGAAGGTGGCGACCGACGTGCGCGCGGT
GCTGGGCAGTCACGGCATCGCCGGCGGTAGTACGGCGTCGGCGAGCGACGCGCAGCTTTCGCAGCTGGGCGACCGCGACA
AGGTGCTGCGGGATGGAGTGGCGATCGTTGGGCGCCTGGTGGAGGAGTTCGCCGAGGGCGAGGGCGTGGACGAGGAGTTG
GCGTGGCAGTTCCTTGCGAATTTCTGGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis