Browse Element(s) Details


OsAffx.10661.1.S1_s_at

Description gb:NM_183890.1
DB_XREF= gi:34894907
GEN=B1140D12.20
TID=OsAffx.10661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1140D12.20 (B1140D12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23040Os.53142.1.S1_at3/111+12945131..12951397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23050Os.27691.2.S1_x_at1/111+12954181..12955005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23060NANA1+12957006..12957209hypothetical protein
LOC_Os01g23070OsAffx.22864.1.S1_x_at11/111+12963066..12965262hypothetical protein
LOC_Os01g23080OsAffx.10661.1.S1_s_at11/111+12971980..12972822hypothetical protein
LOC_Os01g23090NANA1+12973948..12977270retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23100OsAffx.2060.1.S1_at11/111+12979182..12980600hypothetical protein
LOC_Os01g23110NANA1+12981462..12982079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_at3/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_x_at2/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23130OsAffx.8908.1.S1_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.8908.1.S1_x_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.19407.1.S1_at2/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.7337.1.S1_at1/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23144OsAffx.10496.1.S1_at2/111+12993369..12995320retrotransposon protein, putative, unclassified
LOC_Os01g23144OsAffx.22171.1.S1_at1/111+12993369..12995320retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10661.1.S1_s_at--1122--6031Chr01:12972530..12972554 (25 bp)
GAGATCACATCGTCACTGCCAATGT
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--1058--8231Chr01:12972494..12972518 (25 bp)
GGCACATCGGCACAAGCCTTTTTGA
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--208--1191Chr01:12972464..12972488 (25 bp)
AGTACCTGCGGATCAAATCTTCTCC
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--639--10591Chr01:12972445..12972469 (25 bp)
TTCTCCACGGACTGCTGATATGATC
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--333--4411Chr01:12972417..12972441 (25 bp)
GCCACCCATTTGTCGCAGTATTGCG
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--1023--1191Chr01:12972401..12972425 (25 bp)
AGTATTGCGCATACCTAGTGGCCGC
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--767--10551Chr01:12972365..12972389 (25 bp)
TTCTTCCGAACGACGCTACATGGAC
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--644--9871Chr01:12972349..12972373 (25 bp)
TACATGGACCAAGGCGCACTGCAAG
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--303--5411Chr01:12972127..12972151 (25 bp)
GAAGCTCCTGGCAGAGTTCTGGTCA
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--812--1411Chr01:12972076..12972100 (25 bp)
AGACAACGTCAGAGGCCATGCCGAG
LOC_Os01g23080
OsAffx.10661.1.S1_s_at--170--10011Chr01:12972047..12972071 (25 bp)
TAGCTCGCGGTGGTGAGTTCATCAC
LOC_Os01g23080
Target Sequence 
GAGATCACATCGTCACTGCCAATGTCATCCTCGTGTGGCACATCGGCACAAGCCTTTTTGAGATGAAGTACCTGCGGATC
AAATCTTCTCCACGGACTGCTGATATGATCACCGCCACCCATTTGTCGCAGTATTGCGCATACCTAGTGGCCGCCGTCCC
CGAGCTTCTTCCGAACGACGCTACATGGACCAAGGCGCACTGCAAGGAGGTGGCGAGAGACATCAAGAAAGCTCTCGATG
GAGAAGGAAATGACTTTAATCATTTTGTCGATGCTCTTGGTGCGAGCTGCAGGCACAAAGTTTTGCAGCAAGGGTCAAAG
CTGGCGAAACAACTGGTAGGAGAAGTTGGAAGGCTCGAAGACGGAGAAGGAGAGACCAAAGGCGTAGGCGAGGCAGCGTT
GTGGAAGCTCCTGGCAGAGTTCTGGTCAGAGATGGTGCTCTACCTCGCACCGTCAGACAACGTCAGAGGCCATGCCGAGG
CTCTAGCTCGCGGTGGTGAGTTCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10661.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis