Browse Element(s) Details


OsAffx.22910.1.S1_at

Description gb:NM_183680.1
DB_XREF= gi:34894487
GEN=OJ1116_C07.7
TID=OsAffx.22910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1116_C07.7 (OJ1116_C07.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g208203/11hypothetical protein
LOC_Os02g434301/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20770OsAffx.23312.1.S1_s_at11/111+11563494..11564331hypothetical protein
LOC_Os01g20770Os.5377.2.S1_x_at1/111+11563494..11564331hypothetical protein
LOC_Os01g20780Os.40421.1.S1_at9/111+11568088..11568986expressed protein
LOC_Os01g20800NANA1+11573707..11573958hypothetical protein
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22910.1.S1_at--376--3471NONE
CAGTGGCGGGCAAATTGGGCATTTC
NONE
OsAffx.22910.1.S1_at--1030--8233Chr07:13760510..13760534 (25 bp)
GGCAAATTGGGCATTTCATCATATA
NONE
OsAffx.22910.1.S1_at--199--4991Chr01:11588299..11588323 (25 bp)
GCATGCCCACATGGTAATTTTCGAT
NONE
OsAffx.22910.1.S1_at--727--6971Chr01:11588286..11588310 (25 bp)
GTAATTTTCGATGAGCCAAGGACTG
NONE
OsAffx.22910.1.S1_at--479--4396Chr09:17694990..17695014 (25 bp)
GCCAAGGACTGTATATGTCCACATG
NONE
OsAffx.22910.1.S1_at--64--8531NONE
TGGACAATTTGAAAGCCGCCTCCTC
NONE
OsAffx.22910.1.S1_at--207--3071Chr01:11583697..11583721 (25 bp)
AATCTTTGCGTCAACGCTGCCGTTA
NONE
OsAffx.22910.1.S1_at--327--9171NONE
TGCCGTTACCCTCATGGAGGTCATT
NONE
OsAffx.22910.1.S1_at--721--2012Chr01:19157604..19157628 (25 bp)
ACTACACTAGATCAGGTCAGCACTG
NONE
OsAffx.22910.1.S1_at--128--3277Chr12:12912975..12912999 (25 bp)
CAACTTTGACGGGTTCAGCTCCCGG
NONE
OsAffx.22910.1.S1_at--1064--1915Chr08:24173990..24174014 (25 bp)
ACGGGTTCAGCTCCCGGTCAGAGAT
NONE
Target Sequence 
CAGTGGCGGGCAAATTGGGCATTTCATCATATATTTGCATCGAAAGATGACATGGCATGCCCACATGGTAATTTTCGATG
AGCCAAGGACTGTATATGTCCACATGATAAAATCTAAGGGCTTGCTTGGACAATTTGAAAGCCGCCTCCTCCTGCCGGCC
GCCGCTCGCCTCCTCCCGCCGCCGCTTCCTCCCACCAGCCGCCTCCTCCCGCCGGCCGCCGCCGCCGCCACCTCCTCCCG
CGGCGCTCGCCGCCCGCATCGTTGTCATCGTCGCCGCATTCTCATCGTCGTCGCGGCGGCTGCCGAGCTCGTCTCCTCTC
TCGTCGCCCGCCTTGTGGGGAATCTTTGCGTCAACGCTGCCGTTACCCTCATGGAGGTCATTGAAGCTATAATCACTACA
CTAGATCAGGTCAGCACTGACGGGCTCAAACCCTCAACTTTGACGGGTTCAGCTCCCGGTCAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis