Browse Element(s) Details


OsAffx.23061.1.S2_at

Description gb:AK064564.1
DB_XREF= gi:32974582
TID=OsAffx.23061.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D02, full insert sequence.
FL= gb:AK063636.1 gb:AK064564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g341109/11ATP synthase subunit C family protein
LOC_Os05g330902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34100OsAffx.7786.1.S1_at11/1112+20608433..20610797hypothetical protein
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34120OsAffx.19957.1.S1_at8/1112+20637962..20639692hypothetical protein
LOC_Os12g34130OsAffx.32254.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.32253.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.6.S1_s_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.1.S1_x_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.2.S1_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34140NANA12+20650665..20654319retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23061.1.S2_at--78--10311NONE
TTTCTCGCTCTGTTTTGGAAACTAA
NONE
OsAffx.23061.1.S2_at--207--8532Chr05:19322887..19322911 (25 bp)
TGGAAACTAACTACTTCTCCGGAAG
LOC_Os05g33090
OsAffx.23061.1.S2_at--380--10592Chr05:19322901..19322920 (20 bp)
TTCTCCGGAAGCAACGTCAACAACT
LOC_Os05g33090
OsAffx.23061.1.S2_at--424--5171Chr12:20626652..20626676 (25 bp)
GCAAGACTCCTTTCGTAACTACTTT
LOC_Os12g34110
OsAffx.23061.1.S2_at--824--8111Chr12:20626614..20626638 (25 bp)
GGACTTCTTCCTATCAAACTGCTTT
LOC_Os12g34110
OsAffx.23061.1.S2_at--503--7831Chr12:20626558..20626582 (25 bp)
GGTCAATACAATACTCTTCTTCGAA
LOC_Os12g34110
OsAffx.23061.1.S2_at--691--8691Chr12:20626444..20626468 (25 bp)
TGTGCTTGTGCTCACCTACAGGTCT
LOC_Os12g34110
OsAffx.23061.1.S2_at--418--2131Chr12:20626427..20626451 (25 bp)
ACAGGTCTGTCCTAGCATACAGTAT
LOC_Os12g34110
OsAffx.23061.1.S2_at--249--8211Chr12:20626276..20626300 (25 bp)
GGAAGGCATGCTAACTACACTACTA
LOC_Os12g34110
OsAffx.23061.1.S2_at--229--451Chr12:20626214..20626238 (25 bp)
ATCTATTCTTTTTGCTTATTCGTAA
LOC_Os12g34110
OsAffx.23061.1.S2_at--862--5531Chr12:20626180..20626204 (25 bp)
GAAACTTATTTCACTCTAGCAATGA
LOC_Os12g34110
Target Sequence 
TTTCTCGCTCTGTTTTGGAAACTAACTACTTCTCCGGAAGCAACGTCAACAACTTATGCAAGACTCCTTTCGTAACTACT
TTTCGGTAGAAATACGGACTTCTTCCTATCAAACTGCTTTTGCCCAGCAATAATAGGCAAGACTTGATTCAGGTCAATAC
AATACTCTTCTTCGAACTTGTAAGCTTGGGACACAAGCGTAAACTTTTTCAAAAGTAAGACCAGGTACACTGCTAAACAT
AAGTATAAAGAGGTGGAAGGCCGGCTGTGCTTGTGCTCACCTACAGGTCTGTCCTAGCATACAGTATAGAAAAAGACTGT
CTCTTATTTGTGATTTGTCTGAATCAGCGTATATTAACTAATACTACTTTATCCAGTCAATAATTAATTGAAAGGTCGTC
TTTAATTAAAAAGTGCATAAGCAAGCAAGGAACGGAAGGCATGCTAACTACACTACTAGAGTCAATACACTACAAACCAA
ACTACTTGAGTAAGAATCTATTCTTTTTGCTTATTCGTAAGCGCATGAAGAAACTTATTTCACTCTAGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23061.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis