Browse Element(s) Details


OsAffx.23061.2.S1_at

Description tigr:9640.m03295
TID=OsAffx.23061.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=X15919 ATP synthase subunit 9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g341109/11ATP synthase subunit C family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34100OsAffx.7786.1.S1_at11/1112+20608433..20610797hypothetical protein
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34120OsAffx.19957.1.S1_at8/1112+20637962..20639692hypothetical protein
LOC_Os12g34130OsAffx.32254.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.32253.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.6.S1_s_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.1.S1_x_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.2.S1_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34140NANA12+20650665..20654319retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23061.2.S1_at--527--7591NONE
GGGCTTCTTTCACAAAAGTGCTCTA
NONE
OsAffx.23061.2.S1_at--210--1131Chr12:20625475..20625499 (25 bp)
AGTGCTCTAGACATCGGTTCATCCC
LOC_Os12g34110
OsAffx.23061.2.S1_at--265--4232Chr12:13355708..13355732 (25 bp)
CCGAGCACCACATAGTTTCCAGATG
NONE
OsAffx.23061.2.S1_at--1082--7891Chr12:20625404..20625428 (25 bp)
GGTTCTGAGAGGACATTCTTTTGTT
LOC_Os12g34110
OsAffx.23061.2.S1_at--975--5171Chr12:20625336..20625360 (25 bp)
GCAAGTTGACCAATAGCAGCTATGA
LOC_Os12g34110
OsAffx.23061.2.S1_at--221--5071Chr12:20625321..20625345 (25 bp)
GCAGCTATGAAGAACAGCACCTGTG
LOC_Os12g34110
OsAffx.23061.2.S1_at--858--1751NONE
ACCTGTGCACATTCCCGTATATTGA
NONE
OsAffx.23061.2.S1_at--933--92Chr02:11195133..11195152 (20 bp)
ATTCCCGTATATTGAAGCCGCTGAA
NONE
OsAffx.23061.2.S1_at--758--5391Chr12:20623047..20623071 (25 bp)
GAAGCTATTGAGACTTCCTTCCAGT
LOC_Os12g34110
OsAffx.23061.2.S1_at--981--1391Chr12:20623037..20623061 (25 bp)
AGACTTCCTTCCAGTCACTCGAAAT
LOC_Os12g34110
OsAffx.23061.2.S1_at--710--7091Chr12:20623024..20623048 (25 bp)
GTCACTCGAAATTTGGAATGCTAAT
LOC_Os12g34110
Target Sequence 
GGGCTTCTTTCACAAAAGTGCTCTAGACATCGGTTCATCCCGAGCACCACATAGTTTCCAGATGCAAGCTGGCGGGGAAG
AGTTTATGGTTCTGAGAGGACATTCTTTTGTTATTGAATTTAGGATTGGGAAATTGATGTATGTCAGTGAAGAATGCAAG
TTGACCAATAGCAGCTATGAAGAACAGCACCTGTGCACATTCCCGTATATTGAAGCCGCTGAAGAAGCTATTGAGACTTC
CTTCCAGTCACTCGAAATTTGGAATGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23061.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis