Browse Element(s) Details


OsAffx.2307.1.S1_at

Description tigr:9629.m05041
TID=OsAffx.2307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AN1-like Zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g519908/11AN1-like Zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2307.1.S1_at--129--4691Chr01:30207067..30207091 (25 bp)
GCGGACGACGTTGGGTTGTGGCTAG
LOC_Os01g51990
OsAffx.2307.1.S1_at--1098--6611NONE
GTTGTGGCTAGGGATGCAACTGCCA
NONE
OsAffx.2307.1.S1_at--463--8311NONE
GGCTAGGGATGCAACTGCCAACCAC
NONE
OsAffx.2307.1.S1_at--107--7991NONE
GGATGCAACTGCCAACCACCTCGAT
NONE
OsAffx.2307.1.S1_at--715--2771Chr01:30205731..30205755 (25 bp)
AAGAGAAGCCTCTGCGTTCGGGCGA
LOC_Os01g51990
OsAffx.2307.1.S1_at--432--8091Chr01:30205693..30205717 (25 bp)
GGAGCGAGACGCTGGACGAGCGGCT
LOC_Os01g51990
OsAffx.2307.1.S1_at--1103--8331Chr01:30205649..30205673 (25 bp)
GGCTGTGGCTTCTCCGGCTCTGCCA
LOC_Os01g51990
OsAffx.2307.1.S1_at--779--7391Chr01:30205574..30205598 (25 bp)
GTGATGTCCCAGGCGCCGTCGTCAT
LOC_Os01g51990
OsAffx.2307.1.S1_at--922--7191Chr01:30205548..30205572 (25 bp)
GTCGTCCACGGAGCTTCACGGCGCG
LOC_Os01g51990
OsAffx.2307.1.S1_at--553--6751Chr01:30205523..30205547 (25 bp)
GTACCGTGCCGGAGGGCATTCCCGT
LOC_Os01g51990
OsAffx.2307.1.S1_at--1053--9171Chr01:30205517..30205541 (25 bp)
TGCCGGAGGGCATTCCCGTGGACGA
LOC_Os01g51990
Target Sequence 
GCGGACGACGTTGGGTTGTGGCTAGGGATGCAACTGCCAACCACCTCGATCGTCGACTCCCCGGGGAAGAGAAGCCTCTG
CGTTCGGGCGAGCGATGGAGCAGGGGAGCGAGACGCTGGACGAGCGGCTGCCGCTCCCGTGCGCGAACGGCTGTGGCTTC
TCCGGCTCTGCCAACACCCGCGGCCTCTGCTCCAAGTGCTACCGCGACAGCCTCCGCCAGACCGTGATGTCCCAGGCGCC
GTCGTCATCGTCGTCCACGGAGCTTCACGGCGCGGTACCGTGCCGGAGGGCATTCCCGTGGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis