Browse Element(s) Details


OsAffx.23119.1.S1_at

Description tigr:9629.m00438
TID=OsAffx.23119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g202301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20200Os.46995.1.S1_x_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20210NANA12+11780181..11785834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.6996.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_x_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.15723.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.30486.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20230OsAffx.23119.1.S1_at1/1112+11796183..11797223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20240NANA12+11798389..11805464retrotransposon protein, putative, unclassified
LOC_Os12g20250Os.52609.1.S1_at1/1112+11806973..11810659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20260OsAffx.19758.1.S1_at11/1112+11819142..11820473hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23119.1.S1_at--695--4771NONE
GCTGCTCTGCAGCAATGCGACGAAA
NONE
OsAffx.23119.1.S1_at--683--1831Chr01:2412608..2412632 (25 bp)
ACGAAAAAGTTCAGCGAGCTCGCCG
NONE
OsAffx.23119.1.S1_at--727--1591Chr01:2412624..2412648 (25 bp)
AGCTCGCCGCCTCCTGCAAGTGGAA
NONE
OsAffx.23119.1.S1_at--820--9011Chr01:2412638..2412662 (25 bp)
TGCAAGTGGAACCTTCCCTGGCTAA
NONE
OsAffx.23119.1.S1_at--185--8131Chr01:2412645..2412669 (25 bp)
GGAACCTTCCCTGGCTAAGAAGGAG
NONE
OsAffx.23119.1.S1_at--941--8153Chr02:33047346..33047370 (25 bp)
GGAAAGTTTGGCACTCTGCACTTGA
NONE
OsAffx.23119.1.S1_at--442--8251Chr02:33047355..33047375 (21 bp)
GGCACTCTGCACTTGAGCTCAGTTA
NONE
OsAffx.23119.1.S1_at--706--5111NONE
GCACTTGAGCTCAGTTACTATTCCC
NONE
OsAffx.23119.1.S1_at--58--9611Chr01:2413254..2413278 (25 bp)
TCAGTTACTATTCCCATAATCCCTA
NONE
OsAffx.23119.1.S1_at--1020--3035Chr12:11796298..11796324 (23 bp)
AATCCCTAAAATCCCAGCAGTTGCG
LOC_Os12g20230
OsAffx.23119.1.S1_at--160--3051NONE
AATCCCAGCAGTTGCGTGGATGAAT
NONE
Target Sequence 
GCTGCTCTGCAGCAATGCGACGAAAAAGTTCAGCGAGCTCGCCGCCTCCTGCAAGTGGAACCTTCCCTGGCTAAGAAGGA
GGAAGGAAGGTGGGAAGTGGAGAGGAGAGAGAAAGGGAAAGTTTGGCACTCTGCACTTGAGCTCAGTTACTATTCCCATA
ATCCCTAAAATCCCAGCAGTTGCGTGGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis