Browse Element(s) Details


OsAffx.6996.1.S1_at

Description tigr:9639.m00404
TID=OsAffx.6996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g202201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20190OsAffx.4841.1.S1_at3/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22699.1.S1_x_at2/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.31699.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.11259.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22603.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_x_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20210NANA12+11780181..11785834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.6996.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_x_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.15723.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.30486.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20230OsAffx.23119.1.S1_at1/1112+11796183..11797223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20240NANA12+11798389..11805464retrotransposon protein, putative, unclassified
LOC_Os12g20250Os.52609.1.S1_at1/1112+11806973..11810659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20260OsAffx.19758.1.S1_at11/1112+11819142..11820473hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6996.1.S1_at--190--1633Chr11:1002645..1002669 (25 bp)
AGCGGAATCCAAGATCAAGATTGTT
NONE
OsAffx.6996.1.S1_at--315--371Chr11:2079261..2079285 (25 bp)
ATCAAGATTGTTTTGGAAGCAGAGC
NONE
OsAffx.6996.1.S1_at--783--10231Chr11:2079250..2079274 (25 bp)
TTTGGAAGCAGAGCAAGAATCGGGT
NONE
OsAffx.6996.1.S1_at--500--3031Chr11:2079233..2079257 (25 bp)
AATCGGGTGGAGTCCAAATCGGCTA
NONE
OsAffx.6996.1.S1_at--637--3978Chr12:11792812..11792832 (21 bp)
CGGGTGGAGTCCAAATCGGCTACGA
LOC_Os12g20220
OsAffx.6996.1.S1_at--694--4851Chr11:2079212..2079236 (25 bp)
GCTACGATCAAGGTCGGTGGAGTTC
NONE
OsAffx.6996.1.S1_at--364--9431Chr11:2079200..2079223 (24 bp)
TCGGTGGAGTTCGAGTCAGACAAGA
NONE
OsAffx.6996.1.S1_at--17--10636Chr10:12068030..12068200 (25 bp)
TTCGAGTCAGACAAGAGATATGTTT
NONE
OsAffx.6996.1.S1_at--106--6811Chr11:2077829..2077853 (25 bp)
GTTTTACATCAACAACCGTGTGCCT
NONE
OsAffx.6996.1.S1_at--949--10471Chr11:2077826..2077850 (25 bp)
TTACATCAACAACCGTGTGCCTGCT
NONE
OsAffx.6996.1.S1_at--97--10451Chr11:2077529..2077553 (25 bp)
TTAGCCTCCTCGATGACAACCCGTT
NONE
Target Sequence 
AGCGGAATCCAAGATCAAGATTGTTTTGGAAGCAGAGCAAGAATCGGGTGGAGTCCAAATCGGCTACGATCAAGGTCGGT
GGAGTTCGAGTCAGACAAGAGATATGTTTGGGCAAAAGTCTGCCGCAAAGACTTATGGATCAAATCAATTGGCACGCTCA
TACACCTAAAGGCAAGCTTTTGGACCTGCACTGGAGTTAAGCAGATCTCTCAGGCCTCGTGTTTTACATCAACAACCGTG
TGCCTGCTCGAGTTCGCCGTCGAACGCGCCTCGCCCCGTCGCGGCCCTCGCACGGCCGCTGCATGCCCGCGCCGTTTCCG
CTGCACGGCGCGGCGGCAGAGCGCGGCGGGGATGCGGACGACCGCGAGGACGATGAGCTCGACGACAGCAAAGGGGAAGC
AGCAGAAAACCGCGACGCACTCCGCCGCTGTCCCACCTGCCACCTCCCCGCACCGTGGCTGCTGCTCCCGCGCCCGCCGC
CGCTCCCGCTCCCTCCTCATCTCCACGGCCGACGAGCTCCTTAGCCTCCTCGATGACAACCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis