Browse Element(s) Details


OsAffx.19758.1.S1_at

Description tigr:9640.m02006
TID=OsAffx.19758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2026011/11hypothetical protein
LOC_Os03g412001/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20220OsAffx.6996.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_x_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.15723.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220Os.56292.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20220OsAffx.30486.1.S1_at1/1112+11791311..11794970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20230OsAffx.23119.1.S1_at1/1112+11796183..11797223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20240NANA12+11798389..11805464retrotransposon protein, putative, unclassified
LOC_Os12g20250Os.52609.1.S1_at1/1112+11806973..11810659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20260OsAffx.19758.1.S1_at11/1112+11819142..11820473hypothetical protein
LOC_Os12g20270OsAffx.31697.1.S1_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20270OsAffx.16111.1.S1_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20270OsAffx.22699.1.S1_x_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20280OsAffx.27823.1.S1_at11/1112+11841154..11842696hypothetical protein
LOC_Os12g20280OsAffx.27823.2.S1_at6/1112+11841154..11842696hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19758.1.S1_at--152--8231Chr12:11820371..11820395 (25 bp)
GGCAACGGATGCACGGCGACGGGAT
LOC_Os12g20260
OsAffx.19758.1.S1_at--11--7511Chr12:11820336..11820360 (25 bp)
GTGGTGCGCAGTCGCGAGGGCGACA
LOC_Os12g20260
OsAffx.19758.1.S1_at--1088--4693Chr12:11820310..11820334 (25 bp)
GCGGCGATGCATCGGCGCGATGGCG
LOC_Os12g20260
OsAffx.19758.1.S1_at--156--871Chr12:11820291..11820315 (25 bp)
ATGGCGATGGCAGCACGACAACCAC
LOC_Os12g20260
OsAffx.19758.1.S1_at--891--6231Chr12:11820286..11820310 (25 bp)
GATGGCAGCACGACAACCACGGTGA
LOC_Os12g20260
OsAffx.19758.1.S1_at--312--8511Chr12:11820284..11820308 (25 bp)
TGGCAGCACGACAACCACGGTGACG
LOC_Os12g20260
OsAffx.19758.1.S1_at--298--1851Chr12:11820277..11820301 (25 bp)
ACGACAACCACGGTGACGCGACGTT
LOC_Os12g20260
OsAffx.19758.1.S1_at--995--2191Chr12:11820274..11820298 (25 bp)
ACAACCACGGTGACGCGACGTTCGT
LOC_Os12g20260
OsAffx.19758.1.S1_at--190--7771Chr12:11820266..11820290 (25 bp)
GGTGACGCGACGTTCGTGCGGCGCA
LOC_Os12g20260
OsAffx.19758.1.S1_at--182--4591Chr12:11820246..11820270 (25 bp)
GCGCACGCGCATGACTCGGTGGTAT
LOC_Os12g20260
OsAffx.19758.1.S1_at--886--4111Chr12:11820245..11820269 (25 bp)
CGCACGCGCATGACTCGGTGGTATG
LOC_Os12g20260
Target Sequence 
GGCAACGGATGCACGGCGACGGGATGGGCGATGCGGTGGTGCGCAGTCGCGAGGGCGACAGGCGGCGATGCATCGGCGCG
ATGGCGATGGCAGCACGACAACCACGGTGACGCGACGTTCGTGCGGCGCACGCGCATGACTCGGTGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis