Browse Element(s) Details


OsAffx.23120.1.S1_at

Description gb:NM_184340.1
DB_XREF= gi:34895759
GEN=P0024G09.26
TID=OsAffx.23120.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0024G09.26 (P0024G09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0516010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein
LOC_Os01g05180OsAffx.23123.1.S1_at11/111+2431644..2432723hypothetical protein
LOC_Os01g05190OsAffx.23121.1.S1_at11/111+2435289..2435925expressed protein
LOC_Os01g05200OsAffx.30226.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200Os.46785.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200OsAffx.442.1.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23120.1.S1_at--493--8851NONE
TGATCGAACAATTTGCAGCAACAGA
NONE
OsAffx.23120.1.S1_at--296--291Chr01:2416546..2416570 (25 bp)
ATAGCAGCAGGAAGCGACTGCAGCA
LOC_Os01g05160
OsAffx.23120.1.S1_at--1044--4091Chr01:2416658..2416682 (25 bp)
CGACGGCGTGGAAGCAACAACAGCA
LOC_Os01g05160
OsAffx.23120.1.S1_at--1119--7531Chr01:2416769..2416793 (25 bp)
GTGGCGGCATCGAAGCAACAGTAGT
LOC_Os01g05160
OsAffx.23120.1.S1_at--905--2171Chr01:2416785..2416809 (25 bp)
AACAGTAGTAGGCAACGACGAGGAA
LOC_Os01g05160
OsAffx.23120.1.S1_at--721--8371Chr01:2416818..2416842 (25 bp)
GGCGACATCGAATCAGCAGTAGCAG
LOC_Os01g05160
OsAffx.23120.1.S1_at--448--3451Chr01:2416834..2416858 (25 bp)
CAGTAGCAGGCGATGGTAGTGACAA
LOC_Os01g05160
OsAffx.23120.1.S1_at--791--7851Chr01:2416848..2416872 (25 bp)
GGTAGTGACAACATCGACGCAGAGG
LOC_Os01g05160
OsAffx.23120.1.S1_at--886--2091Chr01:2416858..2416882 (25 bp)
ACATCGACGCAGAGGAATCCGCGGA
LOC_Os01g05160
OsAffx.23120.1.S1_at--771--5251Chr01:2416872..2416896 (25 bp)
GAATCCGCGGATACTCTTGATGGCT
LOC_Os01g05160
OsAffx.23120.1.S1_at--49--6491Chr01:2416881..2416905 (25 bp)
GATACTCTTGATGGCTTCCTCATCT
LOC_Os01g05160
Target Sequence 
TGATCGAACAATTTGCAGCAACAGAGGCCATGAGGGCTACGGTGGTAGTGAGCCGGATTCGGGGGTGGCGACGACGAAGG
AGGAGGGAAAGGAGGATGTGGAGACGAAGTAGCAATAGCAGCAGGAAGCGACTGCAGCAGCGAGAGAGAGAGGAGGTTGT
GGTGGCGGCGTCGAAGCGGAAGCAGCAGGTGGCTGCTGTGGTGGTGAGGGAGAGGAGGCTGCGAGACGACGGCGTGGAAG
CAACAACAGCAGCAGGCGGTGGCGTTGAAGTGGAAATAATAGGTGATTGCAGTGGCGGTGATGGAGATGAGGTTGCTACG
ACGGCAAGGGAGAGGAAGTGGCGGCATCGAAGCAACAGTAGTAGGCAACGACGAGGAAGAGGAAGTGGCGACATCGAATC
AGCAGTAGCAGGCGATGGTAGTGACAACATCGACGCAGAGGAATCCGCGGATACTCTTGATGGCTTCCTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis