Browse Element(s) Details


OsAffx.23124.2.S1_s_at

Description tigr:9629.m00466
TID=OsAffx.23124.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Rhomboid family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0543011/11Rhomboid family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein
LOC_Os01g05390OsAffx.10916.1.S1_at11/111+2544717..2545100hypothetical protein
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23124.2.S1_s_at--939--3191Chr01:2564523..2564547 (25 bp)
CAATGACCATGAAGGCTGGCGCCTC
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--817--3911Chr01:2564538..2564562 (25 bp)
CTGGCGCCTCATTACATGCATTTGG
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--982--631Chr01:2564553..2564577 (25 bp)
ATGCATTTGGTTGCACGCTGGTGTT
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--730--7751Chr01:2564572..2564596 (25 bp)
GGTGTTGTCCACATACTTGCTAATA
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--334--3631Chr01:2564587..2564611 (25 bp)
CTTGCTAATATGTTGAGTCTCCTAT
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--209--31Chr01:2564796..2564820 (25 bp)
ATTGGCACGCTATATGTCATCTCTG
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--350--3891Chr01:2564838..2564862 (25 bp)
CTGTCTGCTCTGTTTATGGTGTCAA
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--567--2251Chr01:2564861..2564885 (25 bp)
AAATATCTCTGTTGGTGCCTCAGGT
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--582--3031Chr01:2565433..2565457 (25 bp)
AATGCCAGCGAGCACTGTTCTTGGT
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--1004--1751Chr01:2565464..2565488 (25 bp)
ACCTGAGCTGTGTACCTACTTCAAA
LOC_Os01g05430
OsAffx.23124.2.S1_s_at--336--5611Chr01:2566175..2566199 (25 bp)
GACAAGTACTTCTCACGCAATGCAC
LOC_Os01g05430
Target Sequence 
CAATGACCATGAAGGCTGGCGCCTCATTACATGCATTTGGTTGCACGCTGGTGTTGTCCACATACTTGCTAATATGTTGA
GTCTCCTATTGATTGGAATCAGACTTGAGAAGGAATTTGGTTTCATGAGGATTGGCACGCTATATGTCATCTCTGGGGTT
GGTGGTAGCTTGCTGTCTGCTCTGTTTATGGTGTCAAATATCTCTGTTGGTGCCTCAGGTGCACTGTTTGGATTGCTGGG
GTCCATGCTGTCAGAGCTGATAACAAATTGGACAATATATGAGAATAAGGTTCACCATTGGATTCATATTGGTACTGAAA
GGGTTCAATGCCAGCGAGCACTGTTCTTGGTGCCATTACCTGAGCTGTGTACCTACTTCAAAGTGGAGTTGCAACACGCC
AAACAACTATTGCATGTTAACGATGAATGTTTGTACTTTGATGACAAGTACTTCTCACGCAATGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23124.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis