Browse Element(s) Details


OsAffx.23150.1.S1_at

Description tigr:9629.m00688
TID=OsAffx.23150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0756011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23150.1.S1_at--856--2211Chr01:3621549..3621573 (25 bp)
ACAAGCTCTCGGAATCGCCCTACTA
LOC_Os01g07560
OsAffx.23150.1.S1_at--62--9451Chr01:3621557..3621581 (25 bp)
TCGGAATCGCCCTACTATGTGCTAG
LOC_Os01g07560
OsAffx.23150.1.S1_at--1114--5251Chr01:3621560..3621584 (25 bp)
GAATCGCCCTACTATGTGCTAGCAC
LOC_Os01g07560
OsAffx.23150.1.S1_at--458--10111Chr01:3621572..3621596 (25 bp)
TATGTGCTAGCACCCGCCCCGAGGA
LOC_Os01g07560
OsAffx.23150.1.S1_at--396--5311Chr01:3621609..3621633 (25 bp)
GAAGGATGTGGCAGCATTGTTACGT
LOC_Os01g07560
OsAffx.23150.1.S1_at--178--5071Chr01:3621619..3621643 (25 bp)
GCAGCATTGTTACGTGGCCTTCGAC
LOC_Os01g07560
OsAffx.23150.1.S1_at--996--4931Chr01:3621622..3621646 (25 bp)
GCATTGTTACGTGGCCTTCGACACG
LOC_Os01g07560
OsAffx.23150.1.S1_at--768--10631Chr01:3621638..3621662 (25 bp)
TTCGACACGATGACAGCGCCGAGGC
LOC_Os01g07560
OsAffx.23150.1.S1_at--379--4251Chr01:3621671..3621695 (25 bp)
CCGGGTCTGGGTCGGCCATAAAGTG
LOC_Os01g07560
OsAffx.23150.1.S1_at--255--331Chr01:3621688..3621712 (25 bp)
ATAAAGTGGGCCGATCCAAGACAGC
LOC_Os01g07560
OsAffx.23150.1.S1_at--104--2871Chr01:3621691..3621715 (25 bp)
AAGTGGGCCGATCCAAGACAGCCCG
LOC_Os01g07560
Target Sequence 
ACAAGCTCTCGGAATCGCCCTACTATGTGCTAGCACCCGCCCCGAGGACCGGCCGACCATGAAGGATGTGGCAGCATTGT
TACGTGGCCTTCGACACGATGACAGCGCCGAGGCCCAAAAGGCCGGGTCTGGGTCGGCCATAAAGTGGGCCGATCCAAGA
CAGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis