Browse Element(s) Details


OsAffx.23233.1.S1_at

Description gb:NM_188737.1
DB_XREF= gi:34904557
GEN=B1008C01.10
TID=OsAffx.23233.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.10 (B1008C01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1418011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os01g14160Os.29992.2.S1_x_at11/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_x_at2/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_at1/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14170OsAffx.31422.1.S1_at1/111+7937178..7940562hypothetical protein
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23233.1.S1_at--1031--1971Chr01:7942961..7942985 (25 bp)
ACTCCGGGAGGCTCTGGTTCGTCGA
LOC_Os01g14180
OsAffx.23233.1.S1_at--505--7511Chr01:7942779..7942803 (25 bp)
GTGGACATGTACAAGGCGACCGCTC
LOC_Os01g14180
OsAffx.23233.1.S1_at--805--391Chr01:7942751..7942775 (25 bp)
ATCAGCGCGGTCCTCACAAGATCAG
LOC_Os01g14180
OsAffx.23233.1.S1_at--275--4151Chr01:7942746..7942770 (25 bp)
CGCGGTCCTCACAAGATCAGCGTGT
LOC_Os01g14180
OsAffx.23233.1.S1_at--598--3911Chr01:7942716..7942740 (25 bp)
CTGGCCGATCCGGACTCCGAGGAGT
LOC_Os01g14180
OsAffx.23233.1.S1_at--770--1991Chr01:7942703..7942727 (25 bp)
ACTCCGAGGAGTGGACACTGGAGCA
LOC_Os01g14180
OsAffx.23233.1.S1_at--1007--2171Chr01:7942689..7942713 (25 bp)
ACACTGGAGCACGAGGCGAGCTTCG
LOC_Os01g14180
OsAffx.23233.1.S1_at--498--891Chr01:7942637..7942661 (25 bp)
AGGCGACCGGGCTGCCAGACAAGAT
LOC_Os01g14180
OsAffx.23233.1.S1_at--735--8551Chr01:7942559..7942583 (25 bp)
TGGAGGAGCACCTCTTCGGCGTCGA
LOC_Os01g14180
OsAffx.23233.1.S1_at--292--5891Chr01:7942480..7942504 (25 bp)
GAGCGAGGTCCTCGCTACTCGCTTC
LOC_Os01g14180
OsAffx.23233.1.S1_at--508--3731Chr01:7942466..7942490 (25 bp)
CTACTCGCTTCGTCCGCGCTTGGGA
LOC_Os01g14180
Target Sequence 
ACTCCGGGAGGCTCTGGTTCGTCGACCTCTCCTGGTGCCTCATCACCTGCGACCCCTTCGCCCCCGCGCCGGCGCTGCGC
TTCGTCCCTCTCCCGCCGGGCAAGGAGCTGAGGTGCAGGGAAGCTTGGGGAGTGCTCGACAAGTACCGCTGCGTGAGGGT
GAGCGCCGGCAAGCTGCGGTTCGTGGACATGTACAAGGCGACCGCTCCCCATCAGCGCGGTCCTCACAAGATCAGCGTGT
GGACGCTGGCCGATCCGGACTCCGAGGAGTGGACACTGGAGCACGAGGCGAGCTTCGCCGAGATCTGGGCCGACGACAGC
TACAAGGCGACCGGGCTGCCAGACAAGATCCCCGTGCTCGCGCTCATCCACCCCGAGAACCCGGACGTGGTCTACTTCTT
CCTGGAGGAGCACCTCTTCGGCGTCGACGTGCGCGCGCGCAAGGTTGTGGGGTCTGAGGTCTACGAGCTGGTCGCGCCGC
CGAGCGAGGTCCTCGCTACTCGCTTCGTCCGCGCTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis