Browse Element(s) Details


OsAffx.2325.1.A1_at

Description tigr:9629.m05232
TID=OsAffx.2325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g291202/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein
LOC_Os09g29120Os.49550.1.S1_at11/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29120OsAffx.2325.1.A1_at2/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29130Os.57566.1.S1_at9/119+17702753..17704610ZF-HD protein dimerisation region containing protein, expressed
LOC_Os09g29140NANA9+17710052..17711694hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2325.1.A1_at--175--6232Chr09:17693575..17693599 (25 bp)
GATGGCCTGCATTGCTCCATCGATT
LOC_Os09g29120
OsAffx.2325.1.A1_at--390--873Chr09:17693576..17693600 (25 bp)
ATGGCCTGCATTGCTCCATCGATTC
LOC_Os09g29120
OsAffx.2325.1.A1_at--959--9091Chr01:31229634..31229658 (25 bp)
TGCTCCATCGATTCTACAGTGAGGA
NONE
OsAffx.2325.1.A1_at--355--4791Chr01:31229635..31229659 (25 bp)
GCTCCATCGATTCTACAGTGAGGAC
NONE
OsAffx.2325.1.A1_at--631--3811Chr01:31229636..31229660 (25 bp)
CTCCATCGATTCTACAGTGAGGACG
NONE
OsAffx.2325.1.A1_at--246--9231Chr01:31229637..31229661 (25 bp)
TCCATCGATTCTACAGTGAGGACGG
NONE
OsAffx.2325.1.A1_at--216--4331Chr01:31229638..31229662 (25 bp)
CCATCGATTCTACAGTGAGGACGGA
NONE
OsAffx.2325.1.A1_at--133--3551Chr01:31229639..31229663 (25 bp)
CATCGATTCTACAGTGAGGACGGAG
NONE
OsAffx.2325.1.A1_at--606--511Chr01:31229640..31229664 (25 bp)
ATCGATTCTACAGTGAGGACGGAGC
NONE
OsAffx.2325.1.A1_at--202--9391Chr01:31229641..31229665 (25 bp)
TCGATTCTACAGTGAGGACGGAGCC
NONE
OsAffx.2325.1.A1_at--323--4051Chr01:31229642..31229666 (25 bp)
CGATTCTACAGTGAGGACGGAGCCG
NONE
Target Sequence 
GATGGCCTGCATTGCTCCATCGATTCTACAGTGAGGACGGAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2325.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis