Browse Element(s) Details


OsAffx.23292.2.S1_s_at

Description tigr:9629.m01806
TID=OsAffx.23292.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1858411/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18550Os.47463.1.S1_x_at1/111+10448620..10451212transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18550Os.14491.2.S1_x_at1/111+10448620..10451212transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18560NANA1+10452008..10452857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18570NANA1+10454368..10457659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18584OsAffx.23292.2.S1_s_at11/111+10467338..10470395WRKY DNA binding domain containing protein, expressed
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23292.2.S1_s_at--754--2371Chr01:10469758..10469782 (25 bp)
AAACCGAGGGTGTCCGTGCGTGCGC
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--449--7291Chr01:10469773..10469797 (25 bp)
GTGCGTGCGCGATCCGAAGCACCAA
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--1137--9151Chr01:10469778..10469799 (22 bp)
TGCGCGATCCGAAGCACCAATGATT
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--206--4631Chr01:10469781..10470176 (25 bp)
GCGATCCGAAGCACCAATGATTAGT
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--92--5391Chr01:10469788..10470183 (25 bp)
GAAGCACCAATGATTAGTGATGGGT
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--130--851Chr01:10470272..10470296 (25 bp)
AGTCAGGAAGCAGGTAACTAAATTA
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--199--271Chr01:10470301..10470325 (25 bp)
ATATGCATTCTCATAATATGCGTTT
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--522--3751Chr01:10470310..10470334 (25 bp)
CTCATAATATGCGTTTTCTTGTGTA
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--23--10151Chr01:10470317..10470341 (25 bp)
TATGCGTTTTCTTGTGTAGCTTTAA
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--639--4031Chr01:10470321..10470345 (25 bp)
CGTTTTCTTGTGTAGCTTTAATTAG
LOC_Os01g18584
OsAffx.23292.2.S1_s_at--272--10831Chr01:10470328..10470352 (25 bp)
TTGTGTAGCTTTAATTAGCATGGCG
LOC_Os01g18584
Target Sequence 
AAACCGAGGGTGTCCGTGCGTGCGCGATCCGAAGCACCAATGATTAGTGATGGGTGCCAATGGAGGAAGTACGGGCAGAA
AATGGCAAAGGGGAATCCATGCCCGCGAGCGTACTACCGATGCACAATGGCTATCGGATGCCCAGTCAGGAAGCAGGTAA
CTAAATTAATATATATGCATTCTCATAATATGCGTTTTCTTGTGTAGCTTTAATTAGCATGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23292.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis