Browse Element(s) Details


Os.3623.1.S1_at

Description gb:AK066523.1
DB_XREF= gi:32976541
TID=Os.3623.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071P15, full insert sequence.
FL= gb:AK072264.1 gb:AK104371.1 gb:AK066523.1 gb:AK100420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g186309/11Aspartic proteinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18584OsAffx.23292.2.S1_s_at11/111+10467338..10470395WRKY DNA binding domain containing protein, expressed
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3623.1.S1_at--351--3371Chr01:10489507..10489620 (25 bp)
CACCTTGACACCAGAGCAGTACGTA
LOC_Os01g18630
Os.3623.1.S1_at--456--1511Chr01:10489493..10489516 (24 bp)
AGCAGTACGTAGTGAAGCTGGAGCA
LOC_Os01g18630
Os.3623.1.S1_at--716--4711Chr01:10489477..10489501 (25 bp)
GCTGGAGCAGCAAGGTCAAACTGTT
LOC_Os01g18630
Os.3623.1.S1_at--890--1471Chr01:10489469..10489493 (25 bp)
AGCAAGGTCAAACTGTTTGCATCAG
LOC_Os01g18630
Os.3623.1.S1_at--31--10551Chr01:10489440..10489464 (25 bp)
TTCATGGCGTTCGACGTGCCACCTC
LOC_Os01g18630
Os.3623.1.S1_at--456--8411Chr01:10489295..10489434 (25 bp)
GGCCCACTCTGGATTCTTGGAGACG
LOC_Os01g18630
Os.3623.1.S1_at--892--3891NONE
CTGGATTCTTGGAGACGTGTTCATG
NONE
Os.3623.1.S1_at--305--4011Chr01:10489242..10489266 (25 bp)
CGACTTTGGCAAAAACAGGATTGGG
LOC_Os01g18630
Os.3623.1.S1_at--249--2411Chr01:10489230..10489254 (25 bp)
AAACAGGATTGGGTTCGCCGAGTCT
LOC_Os01g18630
Os.3623.1.S1_at--307--6751Chr01:10488832..10488856 (25 bp)
GTTCAAAATCTCTCATTAACCAATT
LOC_Os01g18630
Os.3623.1.S1_at--128--9791Chr01:10488817..10488840 (24 bp)
TAACCAATTTGTGATGGATGCAGCC
NONE
Target Sequence 
CACCTTGACACCAGAGCAGTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCG
ACGTGCCACCTCCACGCGGCCCACTCTGGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGGC
AAAAACAGGATTGGGTTCGCCGAGTCTGCTTGAATTGCTTGGCTAGGGCCTTCAGGATCATACAACATATCAAGTATTGT
AATGTTTGTTAGGCAGCTTGTTTACTCGGTATTGTAACCTGGGAATGTCTAAAGGTATAGTGCATTAGTAGTAGCATGCA
AAACCTTGTAGAGGAATAAACGTTTTCACGATGGAGCTGTATCAGCTATGGATATGCAGATATGGATCTTGGATGGTGCA
ATGCAGATGTAATGAGCAAATGAGCACGATGAGAATTAGGGCTTTTTAATCTGATCTCATCATATAGGTAATGGTTTGTC
TGGCATATAATGATGGGCCTAAAACTTCTGGCGAGGTTAATAATGGCTGTACTGACTGTTTATGCACCTTAACATTCAGA
GTTCAAAATCTCTCATTAACCAATTTGTGATGGATGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis