Browse Element(s) Details


Os.3625.1.S1_at

Description gb:CB647319
DB_XREF= gi:29642312
DB_XREF=OSJNEb10D05.r
CLONE=OSJNEb10D05
TID=Os.3625.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.3625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1866011/11Isopenicillin N epimerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3625.1.S1_at--318--1831Chr01:10507012..10507036 (25 bp)
ACGCCGTCGGCCTGAGGACGATGCT
LOC_Os01g18660
Os.3625.1.S1_at--76--7851Chr01:10507144..10507168 (25 bp)
GGTACGTGAGGATCTCGCACCAGGT
LOC_Os01g18660
Os.3625.1.S1_at--853--3351Chr01:10507161..10507185 (25 bp)
CACCAGGTGTACAACGTCCGGGAGG
LOC_Os01g18660
Os.3625.1.S1_at--692--4091Chr01:10507226..10507250 (25 bp)
CGACGGCTTCACCTGCAGAAAGTTA
LOC_Os01g18660
Os.3625.1.S1_at--68--9031Chr01:10507239..10507263 (25 bp)
TGCAGAAAGTTACGGCCTCCTGAGA
LOC_Os01g18660
Os.3625.1.S1_at--33--6071Chr01:10509876..10509900 (25 bp)
GAGTTGACATCCAGCATTCCAGCTA
LOC_Os01g18660
Os.3625.1.S1_at--1053--1571Chr01:10509904..10509928 (25 bp)
AGCTCTCCGGCCCAATGGAAGGCAT
LOC_Os01g18660
Os.3625.1.S1_at--45--1251Chr01:10509944..10509968 (25 bp)
AGTTGTGGCAAGTGGCAGTTCTCCT
LOC_Os01g18660
Os.3625.1.S1_at--585--6611Chr01:10509982..10510006 (25 bp)
GATTGGCACCTTCATGTTCAGTTGA
LOC_Os01g18660
Os.3625.1.S1_at--312--1411Chr01:10510079..10510103 (25 bp)
AGAATAATCTGAACCCGGACTTCCA
LOC_Os01g18660
Os.3625.1.S1_at--730--3951Chr01:10510094..10510118 (25 bp)
CGGACTTCCAGAGAGCTTTGCAGCT
LOC_Os01g18660
Target Sequence 
ACGCCGTCGGCCTGAGGACGATGCTGAGGAAGCAGTTCAAGGTGGAGGTGCCGCTCTACTACAACTCCAAGGCGGCGGCG
GCGGATGCGCCGCCGGAGATGGTCAAGGACGGCAATGGCGATCCGGTGACGGGGTACGTGAGGATCTCGCACCAGGTGTA
CAACGTCCGGGAGGAATACGAGGCGCTCAGGGACGCGGTCGCCAAGCTCGTCGCCGACGGCTTCACCTGCAGAAAGTTAC
GGCCTCCTGAGAAGGNANANNNNCTGGCATGAGGAGTTGACATCCAGCATTCCAGCTAGCCAGCTCTCCGGCCCAATGGA
AGGCATTGTGACTGAAATCTTAGTTGTGGCAAGTGGCAGTTCTCCTTGCCTCCTCGGGCGATTGGCACCTTCATGTTCAG
TTGATATAGAATACATTNTGAAATNTGAACTGAAAGTCTGTTCCCCCTTCATTTTTGAGCTGTAAAAAAAAATGTAAGAA
TAATCTGAACCCGGACTTCCAGAGAGCTTTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis