Browse Element(s) Details


Os.12235.2.S1_x_at

Description gb:NM_191134.1
DB_XREF= gi:34909351
GEN=P0638D12.8
TID=Os.12235.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12235 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mitochondrial processing peptidase alpha subuunit, mitochondrial recursor(ALPHA-MPP) (P0638D12.8), mRNA.
PROD=putative mitochondrial processing peptidasealpha subuunit, mitochondrial recursor(ALPHA-MPP)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g128204/11expressed protein
LOC_Os01g186203/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified
LOC_Os04g12790NANA4+7054906..7055352transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12235.2.S1_x_at--1013--9574Chr04:7062550..7062574 (25 bp)
TCTTGCGGCTCGTGCCCAGCCTGGA
LOC_Os04g12820
Os.12235.2.S1_x_at--69--10712Chr04:7062450..7062474 (25 bp)
TTGCCGTGCAACACGCCGTGCCGGA
LOC_Os04g12820
Os.12235.2.S1_x_at--619--1552Chr01:31176190..31176214 (25 bp)
AGCTTCTGGCGGTTCATGGACGCGT
NONE
Os.12235.2.S1_x_at--8--7814Chr04:7062342..7062366 (25 bp)
GGTCGGCGATCGTGCACCCCATGGC
LOC_Os04g12820
Os.12235.2.S1_x_at--433--9671Chr01:31176077..31176101 (25 bp)
TCAGCGCATCCTCCGGAAAGTGACA
NONE
Os.12235.2.S1_x_at--1082--2851NONE
AAGTGACACCAGAGCTACCACTGCT
NONE
Os.12235.2.S1_x_at--992--1971Chr01:31175941..31175962 (22 bp)
ACTGCTCCTCACTGCGAATTTGTTG
NONE
Os.12235.2.S1_x_at--1125--9611Chr01:31175933..31175957 (25 bp)
TCACTGCGAATTTGTTGAGGCGAAC
NONE
Os.12235.2.S1_x_at--34--912Chr04:7062144..7062168 (25 bp)
AGGCGAACATGGCAACACCACGACA
LOC_Os04g12820
Os.12235.2.S1_x_at--829--5631Chr01:31175895..31175919 (25 bp)
GACACGACTACGCTAGAGCTCGAGC
NONE
Os.12235.2.S1_x_at--757--4511Chr01:31175859..31175883 (25 bp)
GCCGACATCAAGAACCTCATCGTGG
NONE
Target Sequence 
TCTTGCGGCTCGTGCCCAGCCTGGAGGCCCCCGAGCTCCCCGCGCCATTGCTCGCCGTGCAGGTGACGCGGTTCGTCGGC
GGCGGGGACGGGGGCGGCGTTGCCGTGCAACACGCCGTGCCGGACGGCCAGAGCTTCTGGCGGTTCATGGACGCGTGGTC
TGCGCCGGCCCTCGGCCGGCCATCTGCCCCGGCGCCGGTGTTTGACCGGTCGGCGATCGTGCACCCCATGGCCGCTGCCA
TGGCTCAGCGCATCCTCCGGAAAGTGACACCAGAGCTACCACTGCTCCTCACTGCGAATTTGTTGAGGCGAACATGGCAA
CACCACGACACGACTACGCTAGAGCTCGAGCGCCACCGCATCGCCGACATCAAGAACCTCATCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12235.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis