Browse Element(s) Details


OsAffx.26009.1.S1_x_at

Description tigr:9632.m01160
TID=OsAffx.26009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1285011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12864OsAffx.25367.1.S1_at1/114+7091153..7094846retrotransposon, putative, centromere-specific
LOC_Os04g12880OsAffx.5986.2.A1_at5/114+7096848..7100159retrotransposon protein, putative, unclassified
LOC_Os04g12890Os.40360.1.S1_x_at1/114+7101475..7105484hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26009.1.S1_x_at--338--8091Chr04:7080713..7080737 (25 bp)
GGACGCCGTGCGCTTGGTGCGGTGC
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--452--7291Chr04:7080692..7080716 (25 bp)
GTGCGCAGCCTGTGCCGTGCATGCT
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--112--3391Chr04:7080687..7080711 (25 bp)
CAGCCTGTGCCGTGCATGCTGCAGC
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--929--8131Chr04:7080661..7080685 (25 bp)
GGCTACCGGTGGTGGAAATCCGTCT
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--438--3631Chr04:7080659..7080683 (25 bp)
CTACCGGTGGTGGAAATCCGTCTGT
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--756--1771Chr04:7080657..7080681 (25 bp)
ACCGGTGGTGGAAATCCGTCTGTCG
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--351--8631Chr04:7080652..7080676 (25 bp)
TGGTGGAAATCCGTCTGTCGGCGTC
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--763--8511Chr04:7080649..7080673 (25 bp)
TGGAAATCCGTCTGTCGGCGTCCGC
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--749--5571Chr04:7080647..7080671 (25 bp)
GAAATCCGTCTGTCGGCGTCCGCCG
LOC_Os04g12850
OsAffx.26009.1.S1_x_at--634--9432Chr07:13779360..13779379 (20 bp)
TCGGCGGTGACGGAATCCATCGAAA
NONE
OsAffx.26009.1.S1_x_at--382--1231Chr04:7080529..7080553 (25 bp)
AGATGTAAAAGGATTCAAGAGTTTC
LOC_Os04g12850
Target Sequence 
GGACGCCGTGCGCTTGGTGCGGTGCGCAGCCTGTGCCGTGCATGCTGCAGCCGGCTACCGGTGGTGGAAATCCGTCTGTC
GGCGTCCGCCGGCGACTCCAAGTCGGCGGTGACGGAATCCATCGAAAACCGCAAAAACGGAACGAGAAGAATGCAAGGAA
TTCGTTTTTGCAATTCAATCTACAAGATGTAAAAGGATTCAAGAGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26009.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis