Browse Element(s) Details


OsAffx.26008.1.S1_at

Description tigr:9632.m01158
TID=OsAffx.26008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified
LOC_Os04g12790NANA4+7054906..7055352transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12864OsAffx.25367.1.S1_at1/114+7091153..7094846retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26008.1.S1_at--349--4711Chr04:7066763..7066787 (25 bp)
GCTGGTGGACCTTCCTTATTGGAAA
LOC_Os04g12830
OsAffx.26008.1.S1_at--334--2991Chr04:7066786..7066810 (25 bp)
AATGTCCAACGAAGTTCACCTTGTT
LOC_Os04g12830
OsAffx.26008.1.S1_at--630--8831Chr04:7066845..7066869 (25 bp)
TGATTTCTTCAGCACGCCATAGCGA
LOC_Os04g12830
OsAffx.26008.1.S1_at--753--551Chr04:7066956..7066980 (25 bp)
ATCCGACATCCCCATTTGATTGGTA
LOC_Os04g12830
OsAffx.26008.1.S1_at--100--7811Chr04:7066987..7067011 (25 bp)
GGTCGATGTGTCCTATCCATTCAAT
LOC_Os04g12830
OsAffx.26008.1.S1_at--1035--6011Chr04:7067064..7067088 (25 bp)
GAGAGTATGCGTACATGCCCATGAA
LOC_Os04g12830
OsAffx.26008.1.S1_at--1046--6831Chr04:7067128..7067152 (25 bp)
GTTTCTGCAGAATTCTCGATGCCTT
LOC_Os04g12830
OsAffx.26008.1.S1_at--504--10191Chr04:7067152..7067176 (25 bp)
TATAGTGATCGATGGCCTGCGGTCC
LOC_Os04g12830
OsAffx.26008.1.S1_at--264--4991Chr04:7067229..7067253 (25 bp)
GCATCCTTGTCGTTACTGCAGAAGA
LOC_Os04g12830
OsAffx.26008.1.S1_at--208--4011Chr04:7067257..7067281 (25 bp)
CGTCGCCAAATATTGTGCCGTGCAA
LOC_Os04g12830
OsAffx.26008.1.S1_at--929--1871Chr04:7067283..7067307 (25 bp)
ACGATGCCGCAGTACACAGAGTCAA
LOC_Os04g12830
Target Sequence 
GCTGGTGGACCTTCCTTATTGGAAATGTCCAACGAAGTTCACCTTGTTGGGTGCAGCTCGGATGAGGAGAAACTCTCTAA
CCTGATTTCTTCAGCACGCCATAGCGACAGATCTCATGTGATCTCTGTATGGGGTTTTCCTGGTCTTGGGAAATCGGTTC
TAGTAAGAACCGTCAGGCGACGCCAAGCGAGTAATCCGACATCCCCATTTGATTGGTATGGCTGGGTCGATGTGTCCTAT
CCATTCAATTTTAGCGACTTCTGTCGAAGAATGCACTCGTATATGTTCGAACAATCACAAGGAGAGTATGCGTACATGCC
CATGAATCCAAAACCAGAGGAAAATATCATCCAAGAGTGTAGAGAGTTTCTGCAGAATTCTCGATGCCTTATAGTGATCG
ATGGCCTGCGGTCCAGGGAACAGTGGGACTCGATAAAGTCGTTGATTGATGGATCCTCTAAGTGTTGCATCCTTGTCGTT
ACTGCAGAAGAAAACGTCGCCAAATATTGTGCCGTGCAAGACGATGCCGCAGTACACAGAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis