Browse Element(s) Details


OsAffx.26007.1.S1_at

Description tigr:9632.m01155
TID=OsAffx.26007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified
LOC_Os04g12790NANA4+7054906..7055352transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26007.1.S1_at--870--2471Chr04:7057395..7057419 (25 bp)
AACAGCTCCATTAGGCGGCAGCCGA
LOC_Os04g12800
OsAffx.26007.1.S1_at--61--5231Chr04:7057372..7057396 (25 bp)
GAATAGTGACGACAGGGCATCTCCA
LOC_Os04g12800
OsAffx.26007.1.S1_at--903--8271Chr04:7057357..7057381 (25 bp)
GGCATCTCCAGGCTGCACTAGCAAT
LOC_Os04g12800
OsAffx.26007.1.S1_at--615--9031Chr04:7057344..7057368 (25 bp)
TGCACTAGCAATGGTGGGCCAGCCA
LOC_Os04g12800
OsAffx.26007.1.S1_at--571--7551Chr04:7057329..7057353 (25 bp)
GGGCCAGCCACTTGATGGGAACGAC
LOC_Os04g12800
OsAffx.26007.1.S1_at--385--8651Chr04:7057314..7057338 (25 bp)
TGGGAACGACAACGGCTGCCATCGA
LOC_Os04g12800
OsAffx.26007.1.S1_at--368--6271Chr04:7057291..7057315 (25 bp)
GATGTCGCCAGATCTGGCAGCGGCA
LOC_Os04g12800
OsAffx.26007.1.S1_at--441--871Chr04:7057229..7057253 (25 bp)
ATGGCGATGGCAGGCCAGCCTCTTG
LOC_Os04g12800
OsAffx.26007.1.S1_at--747--751Chr04:7057198..7057222 (25 bp)
ATGTCAGCGGTTGGCTGGCCTTTCA
LOC_Os04g12800
OsAffx.26007.1.S1_at--1030--8451Chr04:7057183..7057207 (25 bp)
TGGCCTTTCAACAGTGGATCTCGCG
LOC_Os04g12800
OsAffx.26007.1.S1_at--285--2471Chr04:7057099..7057123 (25 bp)
AACAGACGGCGATGGTGCCCAATCT
LOC_Os04g12800
Target Sequence 
AACAGCTCCATTAGGCGGCAGCCGAATAGTGACGACAGGGCATCTCCAGGCTGCACTAGCAATGGTGGGCCAGCCACTTG
ATGGGAACGACAACGGCTGCCATCGATGTCGCCAGATCTGGCAGCGGCAGACTTCGGGGCCACTAGCAGATGGCAGGCCT
CGGCGGATGGCGATGGCAGGCCAGCCTCTTGCTGGCAATGTCAGCGGTTGGCTGGCCTTTCAACAGTGGATCTCGCGGTC
GCCAGATCTAGCGGCGATAGACTTTGGGGCCACCGGATCTAGCACCAGCGGGCCTCAACAGACGGCGATGGTGCCCAATC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis