Browse Element(s) Details


OsAffx.13793.1.S1_at

Description tigr:9632.m01159
TID=OsAffx.13793.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1284011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified
LOC_Os04g12790NANA4+7054906..7055352transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12864OsAffx.25367.1.S1_at1/114+7091153..7094846retrotransposon, putative, centromere-specific
LOC_Os04g12880OsAffx.5986.2.A1_at5/114+7096848..7100159retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13793.1.S1_at--1157--471Chr04:7072183..7072207 (25 bp)
ATCGGCTCGGAGGTTCAAAAATCTT
LOC_Os04g12840
OsAffx.13793.1.S1_at--324--3771Chr04:7072296..7072320 (25 bp)
CTCTACGCCTTCATGTCAAGCAGAA
LOC_Os04g12840
OsAffx.13793.1.S1_at--812--2751Chr04:7072323..7072347 (25 bp)
AAGATGGTGTCCTCCAATTTCGGGC
LOC_Os04g12840
OsAffx.13793.1.S1_at--744--3111Chr04:7072338..7072362 (25 bp)
AATTTCGGGCTCATCTTTTCAGCAA
LOC_Os04g12840
OsAffx.13793.1.S1_at--1094--5131Chr04:7072359..7072383 (25 bp)
GCAAACTTCAGCACCTTGAGATTGT
LOC_Os04g12840
OsAffx.13793.1.S1_at--76--6611Chr04:7072378..7072402 (25 bp)
GATTGTTTGCAGGTCCAACTTACAT
LOC_Os04g12840
OsAffx.13793.1.S1_at--648--3831Chr04:7072439..7072463 (25 bp)
CTGCTGAAGATCCACTGCCATGATG
LOC_Os04g12840
OsAffx.13793.1.S1_at--1019--691Chr04:7072458..7072482 (25 bp)
ATGATGGGTCGTTACTGCAGCTTTC
LOC_Os04g12840
OsAffx.13793.1.S1_at--876--8591Chr04:7072483..7072507 (25 bp)
TGGGCTAAAGCATCCAGTTTCCCTC
LOC_Os04g12840
OsAffx.13793.1.S1_at--1091--6691Chr04:7072520..7072544 (25 bp)
GTTCTGGGTACCTTTGACGACGCAC
LOC_Os04g12840
OsAffx.13793.1.S1_at--597--2011Chr04:7072543..7072567 (25 bp)
ACTCATGGAGTCTTGGCGGCAGCAA
LOC_Os04g12840
Target Sequence 
ATCGGCTCGGAGGTTCAAAAATCTTAGGAACCTAAGGAAGTTGTGCCTAGAGATGAATACTACACTATTCACACAGAACG
TACTGCTCCTCGGGAGCGTATCAAGTCTGCGAACTCTACGCCTTCATGTCAAGCAGAATCAAGATGGTGTCCTCCAATTT
CGGGCTCATCTTTTCAGCAAACTTCAGCACCTTGAGATTGTTTGCAGGTCCAACTTACATGTAATATTTGACGAAGAAGC
AATGCAGAAGCTAGAGCTGCTGAAGATCCACTGCCATGATGGGTCGTTACTGCAGCTTTCTGGGCTAAAGCATCCAGTTT
CCCTCAACCAAGTGCGGGTTCTGGGTACCTTTGACGACGCACTCATGGAGTCTTGGCGGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis