Browse Element(s) Details


Os.48522.1.A1_s_at

Description gb:CR284199
DB_XREF= gi:44670765
DB_XREF=CR284199
CLONE=y682h05p3
TID=Os.48522.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48522 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192355.1 (A.thaliana) putative aspartic protease (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1863011/11Aspartic proteinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18584OsAffx.23292.2.S1_s_at11/111+10467338..10470395WRKY DNA binding domain containing protein, expressed
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48522.1.A1_s_at--510--10531Chr01:10489182..10489206 (25 bp)
TTCAGGATCATACAACATATCAAGT
LOC_Os01g18630
Os.48522.1.A1_s_at--1068--3371Chr01:10489139..10489163 (25 bp)
CAGCTTGTTTACTCGGTATTGTAAC
LOC_Os01g18630
Os.48522.1.A1_s_at--457--7811Chr01:10489125..10489149 (25 bp)
GGTATTGTAACCTGGGAATGTCTAA
LOC_Os01g18630
Os.48522.1.A1_s_at--348--2571Chr01:10489054..10489078 (25 bp)
AACGTTTTCACGATGGAGCTGTATC
LOC_Os01g18630
Os.48522.1.A1_s_at--857--5891Chr01:10489039..10489063 (25 bp)
GAGCTGTATCAGCTATGGATATGCA
LOC_Os01g18630
Os.48522.1.A1_s_at--1005--5091Chr01:10488969..10488993 (25 bp)
GCACGATGAGAATTAGGGCTTTTTA
LOC_Os01g18630
Os.48522.1.A1_s_at--220--7591Chr01:10488954..10488978 (25 bp)
GGGCTTTTTAATCTGATCTCATCAT
LOC_Os01g18630
Os.48522.1.A1_s_at--661--271Chr01:10488929..10488953 (25 bp)
ATAGGTAATGGTTTGTCTGGCATAT
LOC_Os01g18630
Os.48522.1.A1_s_at--248--771Chr01:10488900..10488924 (25 bp)
ATGGGCCTAAAACTTCTGGCGAGGT
LOC_Os01g18630
Os.48522.1.A1_s_at--747--3911Chr01:10488885..10488909 (25 bp)
CTGGCGAGGTTAATAATGGCTGTAC
LOC_Os01g18630
Os.48522.1.A1_s_at--172--8351Chr01:10488868..10488892 (25 bp)
GGCTGTACTGACTGTTTATGCACCT
LOC_Os01g18630
Target Sequence 
TTCAGGATCATACAACATATCAAGTATTGTAATGTTTGTTAGNCAGCTTGTTTACTCGGTATTGTAACCTGGGAATGTCT
AAAGGTATAGTGCATTAGTAGTAGCATGCAAANCCTTGTAGAGGAATAAACGTTTTCACGATGGAGCTGTATCAGCTATG
GATATGCAGATATGGATCTTGGATGGTGCAATGCAGATGTAATGAGCAAATGAGCACGATGAGAATTAGGGCTTTTTAAT
CTGATCTCATCATATAGGTAATGGTTTGTCTGGCATATAATGATGGGCCTAAAACTTCTGGCGAGGTTAATAATGGCTGT
ACTGACTGTTTATGCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48522.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis