Browse Element(s) Details


OsAffx.23293.2.S1_x_at

Description tigr:9629.m01809
TID=OsAffx.23293.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1862011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18584OsAffx.23292.2.S1_s_at11/111+10467338..10470395WRKY DNA binding domain containing protein, expressed
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23293.2.S1_x_at--1137--8551Chr01:10486123..10486147 (25 bp)
TGGATCCGCCGGTCGACGCGGCATA
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--863--5791Chr01:10486109..10486133 (25 bp)
GACGCGGCATACTTCGGCAACTGCG
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--373--9451Chr01:10486096..10486120 (25 bp)
TCGGCAACTGCGTCCGGTGCTGCGT
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--988--4611Chr01:10485998..10486022 (25 bp)
GCGATCGACGGGTTCTTGGAGCACC
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--60--1911Chr01:10485991..10486015 (25 bp)
ACGGGTTCTTGGAGCACCCGATGGT
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--358--6711Chr01:10485960..10485984 (25 bp)
GTTCGACGCGTGGATCGACGCCGTC
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--684--4011Chr01:10485895..10485919 (25 bp)
CGTCGCCGCGGTTTCAGGTGTACGA
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--693--1211Chr01:10485835..10485859 (25 bp)
AGTTCGCGTCGGAGAGTTTGCCCAA
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--318--1191Chr01:10485821..10485845 (25 bp)
AGTTTGCCCAATGGCATGGTGGCGA
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--1104--3191Chr01:10485813..10485837 (25 bp)
CAATGGCATGGTGGCGATGACCGCC
LOC_Os01g18620
OsAffx.23293.2.S1_x_at--641--8871Chr01:10485763..10485787 (25 bp)
TGATGGCGACGCTCCGTCCGGAGCA
LOC_Os01g18620
Target Sequence 
TGGATCCGCCGGTCGACGCGGCATACTTCGGCAACTGCGTCCGGTGCTGCGTCGCCGGGGCGGCCGCCGGCGACCTGGCC
GACGCCCACCGCGGCGTCCTGCACGCGCGCGAGGCGATCCGGGAGGCGATCGACGGGTTCTTGGAGCACCCGATGGTGGA
GGCGTTCGACGCGTGGATCGACGCCGTCGCCGCGCTGGTCCGGCAGCCCGGGTTCGTGGCCGTGACCGCGTCGCCGCGGT
TTCAGGTGTACGAGGTGGATTTGGGCTGGGGCGCGCCGAGCCGGGTGGAGTTCGCGTCGGAGAGTTTGCCCAATGGCATG
GTGGCGATGACCGCCGGGCGGAAGGAGGCGAGCGTGCAGGTGATGGCGACGCTCCGTCCGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23293.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis