Browse Element(s) Details


OsAffx.23323.1.S1_x_at

Description tigr:9629.m02043
TID=OsAffx.23323.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2138011/11FAD dependent oxidoreductase family protein, expressed
LOC_Os09g080001/11hypothetical protein
LOC_Os09g322901/11Sarcosine oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified
LOC_Os01g21380OsAffx.23323.1.S1_x_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21380OsAffx.23323.1.S1_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008115molecular_functionsarcosine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23323.1.S1_x_at--543--5954Chr12:20198924..20198948 (25 bp)
GAGCAAGCTGGTCAAGTCCGTCGCC
NONE
OsAffx.23323.1.S1_x_at--512--1831Chr01:11927379..11927403 (25 bp)
ACGCGCTCGTCCTGTACTGGAAGGT
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--623--9391Chr01:11927373..11927397 (25 bp)
TCGTCCTGTACTGGAAGGTCAAGCC
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--660--4011Chr01:11927268..11927292 (25 bp)
CGTCGCTGGAGCTCCCGGGCCTGAT
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--87--8831Chr01:11927247..11927271 (25 bp)
TGATCAAGATCAACTACGACGGCGG
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--837--9331Chr01:11927160..11927184 (25 bp)
TCGCCCGGTGGATCGAGGAGTTCAT
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--511--6071Chr01:11927143..11927167 (25 bp)
GAGTTCATGCCGGACCACGTCGAGG
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--878--8252Chr09:19272378..19272402 (25 bp)
GGCAGCCGTGCATGTACTCCATGAC
LOC_Os09g32290
OsAffx.23323.1.S1_x_at--179--8751Chr01:11927085..11927109 (25 bp)
TGTACTCCATGACGCCGGACAAGGA
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--1037--3171Chr01:11927066..11927090 (25 bp)
CAAGGACTTCGTGATCGACTTCCTC
LOC_Os01g21380
OsAffx.23323.1.S1_x_at--225--6431Chr01:11926961..11926985 (25 bp)
GATCTTGGCCGAGATGGCCATGGAC
LOC_Os01g21380
Target Sequence 
GAGCAAGCTGGTCAAGTCCGTCGCCGGCGTGGACCTCCCCATCCAGCCGCTGCACGCGCTCGTCCTGTACTGGAAGGTCA
AGCCCGGCCGCGAGCGCGAGCTCGCGGCGGAGGCCGGCTTCCCGACGTTCTCCAGCCACGGCGACCCGCACGTGTACGGC
ACGCCGTCGCTGGAGCTCCCGGGCCTGATCAAGATCAACTACGACGGCGGCCCGCCGTGCGACCCGGACGGCCGGGACTG
GGCCGGCGGCGGCGGCGACGCGGCCTCCCGCGTCGCCCGGTGGATCGAGGAGTTCATGCCGGACCACGTCGAGGCCGCCG
GCGGGCCGGTCGTCCGGCAGCCGTGCATGTACTCCATGACGCCGGACAAGGACTTCGTGATCGACTTCCTCGGCGGCGAG
TTCGGCGACGACGTGGTGGTCGGGGCCGGGTTCTCCGGCCACGGGTTCAAGATGGGGCCGGCGGTGGGGAGGATCTTGGC
CGAGATGGCCATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23323.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis