Browse Element(s) Details


Os.26827.2.A1_x_at

Description gb:NM_183740.1
DB_XREF= gi:34894607
GEN=B1012D10.26
TID=Os.26827.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26827 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative pre-mRNA splicing factor SF2 (B1012D10.26), mRNA.
PROD=putative pre-mRNA splicing factor SF2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2142011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified
LOC_Os01g21380OsAffx.23323.1.S1_x_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21380OsAffx.23323.1.S1_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0006376biological_processmRNA splice site selection
GO:0048024biological_processregulation of nuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26827.2.A1_x_at--982--7811Chr01:11944179..11944203 (25 bp)
GGTCAATCTTACTCATACGATCGCC
LOC_Os01g21420
Os.26827.2.A1_x_at--331--8031Chr01:11944230..11944254 (25 bp)
GGAGGTGTTTCTAGGCGTTCTGAAT
LOC_Os01g21420
Os.26827.2.A1_x_at--190--251Chr01:11944253..11944358 (25 bp)
ATATCGCGTTATGGTCACTGGCTTA
LOC_Os01g21420
Os.26827.2.A1_x_at--1051--9971Chr01:11944357..11944381 (25 bp)
TACCTTCATCGGCATCATGGCAGGA
LOC_Os01g21420
Os.26827.2.A1_x_at--620--9551Chr01:11944456..11944475 (20 bp)
TCTTAAGGACCATATGCGGCGGGCT
LOC_Os01g21420
Os.26827.2.A1_x_at--535--8731Chr01:11945452..11945476 (25 bp)
TGTCTTCTAGATGCATTTGATTGTG
LOC_Os01g21420
Os.26827.2.A1_x_at--92--6611Chr01:11945470..11945494 (25 bp)
GATTGTGATCTTTCGTCAACGTGTT
LOC_Os01g21420
Os.26827.2.A1_x_at--155--7091Chr01:11945484..11945508 (25 bp)
GTCAACGTGTTCTTATTTCTATGAT
LOC_Os01g21420
Os.26827.2.A1_x_at--40--8831Chr01:11945620..11945640 (21 bp)
TGATAGATCTGTTTCTCGGTCACCG
LOC_Os01g21420
Os.26827.2.A1_x_at--329--7831Chr01:11945633..11945657 (25 bp)
GGTCACCGTCACCTGTGGATGAAAG
LOC_Os01g21420
Os.26827.2.A1_x_at--208--2811Chr01:11946515..11946539 (25 bp)
AAGATCACGGACTCCTGTTTCTTCA
LOC_Os01g21420
Target Sequence 
GGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCG
CGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCT
TCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATT
AGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGATAATATGTCTTCTAGATGCATTTGA
TTGTGATCTTTCGTCAACGTGTTCTTATTTCTATGATAGATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAA
TATCAAGATCACGGACTCCTGTTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26827.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis