Browse Element(s) Details


Os.20538.2.S1_x_at

Description gb:NM_183744.1
DB_XREF= gi:34894615
GEN=P0028G04.3
TID=Os.20538.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0028G04.3 (P0028G04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0028G04.3 (P0028G04.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein
LOC_Os01g21480NANA1+11975113..11976164transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g21490Os.47463.1.S1_x_at6/111+11981863..11985405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g21490Os.14491.2.S1_x_at5/111+11981863..11985405transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20538.2.S1_x_at--258--5331Chr01:11963508..11963532 (25 bp)
GAAGTAACTCTTCCCCTGTTGAAGT
LOC_Os01g21460
Os.20538.2.S1_x_at--318--2731Chr01:11963536..11963560 (25 bp)
AAGCACTTCAGCTCCATTCAGAGTT
LOC_Os01g21460
Os.20538.2.S1_x_at--595--8891Chr01:11963560..11963584 (25 bp)
TGAGAACGCTTCTGTTTCCCTGGAA
LOC_Os01g21460
Os.20538.2.S1_x_at--720--6971Chr01:11963592..11963616 (25 bp)
GTACGCCTGGTCAAGTGGTGAAGCA
LOC_Os01g21460
Os.20538.2.S1_x_at--112--1571Chr01:11963641..11963665 (25 bp)
AGCTTTGAAGCATGTCTACTCTGGA
LOC_Os01g21460
Os.20538.2.S1_x_at--437--6931Chr01:11963697..11963721 (25 bp)
GTAGTGGTCCTGTATCTGGATTGAC
LOC_Os01g21460
Os.20538.2.S1_x_at--1006--2771Chr01:11963730..11963754 (25 bp)
AAGAGGCCTCTAAAACACCTGCTAC
LOC_Os01g21460
Os.20538.2.S1_x_at--1043--5511Chr01:11963761..11963785 (25 bp)
GAAAACTGAGAGCACATCCCCAGCT
LOC_Os01g21460
Os.20538.2.S1_x_at--664--3151Chr01:11963800..11963824 (25 bp)
AATTGAGGAGACCACAGCCCCAGAT
LOC_Os01g21460
Os.20538.2.S1_x_at--498--8151Chr01:11963876..11963900 (25 bp)
GGAAAGTCATGCTCATCTACCAAGA
LOC_Os01g21460
Os.20538.2.S1_x_at--725--4751Chr01:11963909..11963933 (25 bp)
GCTGAGAATTCATCCTGTGCTGCAA
LOC_Os01g21460
Target Sequence 
GAAGTAACTCTTCCCCTGTTGAAGTCACAAGCACTTCAGCTCCATTCAGAGTTGAGAACGCTTCTGTTTCCCTGGAAGCC
AGGAGTACGCCTGGTCAAGTGGTGAAGCAAGAACCGGTTTTTGAAAAACCACCAGCTTTGAAGCATGTCTACTCTGGAAA
GAGGAGGCGAAAACTTAAAATGAAGGAGGGTAGTGGTCCTGTATCTGGATTGACCCAGAGTAAAGAGGCCTCTAAAACAC
CTGCTACAAAGAAGAAAACTGAGAGCACATCCCCAGCTGCAAAAAAGCTGAAAATTGAGGAGACCACAGCCCCAGATGAA
GGGAAGAAAGCTGTGAAGACTCACTCAACTGGAAAGAAGCGAAAAGCTGGAAAGTCATGCTCATCTACCAAGAATCAGGA
AGCTGAGAATTCATCCTGTGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20538.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis