Browse Element(s) Details


Os.10187.1.S1_at

Description gb:AK119788.1
DB_XREF= gi:37989411
TID=Os.10187.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1012D10.27 (B1012D10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G04, full insert sequence.
FL= gb:AK058821.1 gb:AK119788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2144011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein
LOC_Os01g21480NANA1+11975113..11976164transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10187.1.S1_at--1108--7491Chr01:11954632..11954656 (25 bp)
GTGGTCTTGTATTCAGTACTTTCAG
LOC_Os01g21440
Os.10187.1.S1_at--672--2871Chr01:11954662..11954686 (25 bp)
AAGTGGTATCTGCTGGATTTGGCAT
LOC_Os01g21440
Os.10187.1.S1_at--184--8271Chr01:11954682..11954706 (25 bp)
GGCATGTTTACTGTTATATTTACCA
LOC_Os01g21440
Os.10187.1.S1_at--196--191Chr01:11954699..11954723 (25 bp)
ATTTACCAACTCGAGCATTTTGCTT
LOC_Os01g21440
Os.10187.1.S1_at--404--3591Chr01:11954714..11954738 (25 bp)
CATTTTGCTTGTTCTGTGGTATGCC
LOC_Os01g21440
Os.10187.1.S1_at--366--7511Chr01:11954729..11954753 (25 bp)
GTGGTATGCCTTTCCGTTATACATT
LOC_Os01g21440
Os.10187.1.S1_at--225--8751Chr01:11954812..11954836 (25 bp)
TGTAGAACCGTAATCCATCAACTGG
LOC_Os01g21440
Os.10187.1.S1_at--924--3031Chr01:11954823..11954847 (25 bp)
AATCCATCAACTGGCTGAACCTTTT
LOC_Os01g21440
Os.10187.1.S1_at--524--2631Chr01:11954840..11954864 (25 bp)
AACCTTTTTGTTCCGTGAATGCAGA
LOC_Os01g21440
Os.10187.1.S1_at--443--5051Chr01:11954860..11954884 (25 bp)
GCAGAAAGGCCATTGCTTAGTGTTT
LOC_Os01g21440
Os.10187.1.S1_at--1063--5551Chr01:11954987..11955011 (25 bp)
GAAAGGTGTGATTAACGGCTGGTTT
LOC_Os01g21440
Target Sequence 
GTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCG
AGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTAT
GTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGGCCA
TTGCTTAGTGTTTTTTTTATCTNATTNNNTGTGAAGATAATATGTNTGTNACTTGTGCTTCGGTNGTGTAACTCTGGAAT
ACGATNAAACATGATGAAAATGGAAGACATGGACATGAAAGGTGTGATTAACGGCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis