Browse Element(s) Details


Os.23598.1.S1_at

Description gb:AK099887.1
DB_XREF= gi:32985096
TID=Os.23598.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1012D10.25 (B1012D10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112E08, full insert sequence.
FL= gb:AK099887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2141010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified
LOC_Os01g21380OsAffx.23323.1.S1_x_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21380OsAffx.23323.1.S1_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23598.1.S1_at--559--4231Chr01:11936114..11936138 (25 bp)
CCGTTGTAGGCGCAAGAAGCATGAT
LOC_Os01g21410
Os.23598.1.S1_at--580--3511Chr01:11936095..11936119 (25 bp)
CATGATGTGAGGATGCTGGATCCTT
LOC_Os01g21410
Os.23598.1.S1_at--847--671Chr01:11936026..11936050 (25 bp)
ATGACCTATATATACCACCGCAGTT
LOC_Os01g21410
Os.23598.1.S1_at--1131--10391Chr01:11935977..11936001 (25 bp)
TTTTGTGCAGCTTGTGCTGATGTGT
LOC_Os01g21410
Os.23598.1.S1_at--234--4751Chr01:11935962..11935986 (25 bp)
GCTGATGTGTGGTCAAACTAATTAC
LOC_Os01g21410
Os.23598.1.S1_at--19--7611Chr01:11935899..11935923 (25 bp)
GGGCAATCAGTAGTTGTGTGAGCAT
LOC_Os01g21410
Os.23598.1.S1_at--693--7471Chr01:11935884..11935908 (25 bp)
GTGTGAGCATGTTTTCGAGAATTCT
LOC_Os01g21410
Os.23598.1.S1_at--255--6811Chr01:11935874..11935898 (25 bp)
GTTTTCGAGAATTCTGTATGTGCAT
LOC_Os01g21410
Os.23598.1.S1_at--1072--771Chr01:11935857..11935881 (25 bp)
ATGTGCATGTATGATCTATGCTGTG
LOC_Os01g21410
Os.23598.1.S1_at--794--9111Chr01:11935839..11935863 (25 bp)
TGCTGTGCCAGCAGTTGAATTTCCT
LOC_Os01g21410
Os.23598.1.S1_at--770--5211Chr01:11935823..11935847 (25 bp)
GAATTTCCTGGTATCACTTGCTGCT
NONE
Target Sequence 
CCGTTGTAGGCGCAAGAAGCATGATGTGAGGATGCTGGATCCTTGAGNCAAAAACTTGAAACTTTTTGGTAAAATATGAA
ATATCTACATGACCTATATATACCACCGCAGTTNTGAGGAATCAATTTCCTTGCTTNTTTTGTGCAGCTTGTGCTGATGT
GTGGTCAAACTAATTACTGATGTATCAATGTATGTATAGTTGATTTGTTGTTCCGGGGCAATCAGTAGTTGTGTGAGCAT
GTTTTCGAGAATTCTGTATGTGCATGTATGATCTATGCTGTGCCAGCAGTTGAATTTCCTGGTATCACTTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis