Browse Element(s) Details


OsAffx.23325.1.S1_at

Description tigr:9629.m02050
TID=OsAffx.23325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DSS1SEM1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g214408/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein
LOC_Os01g21480NANA1+11975113..11976164transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23325.1.S1_at--650--4851Chr01:11953150..11953174 (25 bp)
GCTACGACGGCCCATTTGCCATCGT
NONE
OsAffx.23325.1.S1_at--957--1851Chr01:11953153..11953177 (25 bp)
ACGACGGCCCATTTGCCATCGTGCT
NONE
OsAffx.23325.1.S1_at--100--7091Chr01:11953193..11953217 (25 bp)
GTCTCCCGTCTACTACCGTATTTCT
NONE
OsAffx.23325.1.S1_at--529--2651Chr01:11954203..11954226 (24 bp)
AAGCCCCGAGTTCTTGACATACAAG
LOC_Os01g21440
OsAffx.23325.1.S1_at--761--8931Chr01:11954216..11954240 (25 bp)
TGACATACAAGTGACTCTTTTTGGG
LOC_Os01g21440
OsAffx.23325.1.S1_at--380--9531Chr01:11954231..11954255 (25 bp)
TCTTTTTGGGCCGTCCGATTACGCT
LOC_Os01g21440
OsAffx.23325.1.S1_at--1009--10231Chr01:11954235..11954259 (25 bp)
TTTGGGCCGTCCGATTACGCTTCAT
LOC_Os01g21440
OsAffx.23325.1.S1_at--258--8411Chr01:11954239..11954263 (25 bp)
GGCCGTCCGATTACGCTTCATTTAG
LOC_Os01g21440
OsAffx.23325.1.S1_at--708--7231Chr01:11954243..11954267 (25 bp)
GTCCGATTACGCTTCATTTAGTTCT
LOC_Os01g21440
OsAffx.23325.1.S1_at--793--6551Chr01:11954247..11954271 (25 bp)
GATTACGCTTCATTTAGTTCTGATG
LOC_Os01g21440
OsAffx.23325.1.S1_at--1130--1811Chr01:11954251..11954271 (21 bp)
ACGCTTCATTTAGTTCTGATGAATG
LOC_Os01g21440
Target Sequence 
GCTACGACGGCCCATTTGCCATCGTGCTCGTGCCGTGGCTGGCGTCTCCCGTCTACTACCGTATTTCTCCTTTCCCCGAC
CCCAAGCAAAGCACATCGACTCCTATCGGCGGTCGCGCGAGCTCCAGCGCCAAGCCCCGAGTTCTTGACATACAAGTGAC
TCTTTTTGGGCCGTCCGATTACGCTTCATTTAGTTCTGATGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis