Browse Element(s) Details


OsAffx.23357.2.S1_s_at

Description tigr:9629.m02288
TID=OsAffx.23357.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g256002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23357.2.S1_s_at--1081--3751Chr01:13329278..13329302 (25 bp)
CTCTCAGCTTTTTGCTGATGTTTCT
NONE
OsAffx.23357.2.S1_s_at--694--2751Chr01:13329305..13329329 (25 bp)
AAGAACAGTGAGAATCCATCCACAA
NONE
OsAffx.23357.2.S1_s_at--881--9232Chr10:12936532..12936556 (25 bp)
TCCATCCACAATTCCGCATACATAT
LOC_Os10g25600
OsAffx.23357.2.S1_s_at--204--3172Chr10:12936540..12936564 (25 bp)
CAATTCCGCATACATATGTTGGTGC
LOC_Os10g25600
OsAffx.23357.2.S1_s_at--47--2091Chr01:13329338..13329362 (25 bp)
ACATATGTTGGTGCGTTTATCCCCT
NONE
OsAffx.23357.2.S1_s_at--1012--711Chr01:13329342..13329366 (25 bp)
ATGTTGGTGCGTTTATCCCCTAGTT
NONE
OsAffx.23357.2.S1_s_at--608--9051Chr01:13329349..13329373 (25 bp)
TGCGTTTATCCCCTAGTTGCAAAAA
NONE
OsAffx.23357.2.S1_s_at--99--10411Chr01:13329354..13329378 (25 bp)
TTATCCCCTAGTTGCAAAAAGGCTA
NONE
OsAffx.23357.2.S1_s_at--380--2931Chr01:13329372..13329396 (25 bp)
AAGGCTAGGAAACTGTTGAGCATAG
NONE
OsAffx.23357.2.S1_s_at--320--2391Chr01:13329381..13329405 (25 bp)
AAACTGTTGAGCATAGATTTCGGAG
NONE
OsAffx.23357.2.S1_s_at--965--4951Chr01:13329391..13329415 (25 bp)
GCATAGATTTCGGAGTGCATGTCAG
NONE
Target Sequence 
CTCTCAGCTTTTTGCTGATGTTTCTGAAAGAACAGTGAGAATCCATCCACAATTCCGCATACATATGTTGGTGCGTTTAT
CCCCTAGTTGCAAAAAGGCTAGGAAACTGTTGAGCATAGATTTCGGAGTGCATGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23357.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis