Browse Element(s) Details


OsAffx.23383.1.S1_x_at

Description tigr:9629.m02427
TID=OsAffx.23383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25070OsAffx.23384.1.S1_at11/111+14132470..14132748hypothetical protein
LOC_Os01g25080NANA1+14135454..14135777hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23383.1.S1_x_at--1051--9231Chr01:14111454..14111478 (25 bp)
TCCTTGGTCGCAGAGGCCAGCGGCT
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--1077--4311Chr01:14111453..14111477 (25 bp)
CCTTGGTCGCAGAGGCCAGCGGCTT
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--1126--7211Chr01:14111448..14111472 (25 bp)
GTCGCAGAGGCCAGCGGCTTGACGG
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--28--4931Chr01:14111432..14111456 (25 bp)
GCTTGACGGTGCTCTTGACGCCGAG
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--918--4691Chr01:14111386..14111410 (25 bp)
GCGGCTTGACGGTGCTCTTGACGCC
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--330--9571Chr01:14111371..14111395 (25 bp)
TCTTGACGCCGGCATTGGTCTTGAC
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--171--3631Chr01:14111370..14111394 (25 bp)
CTTGACGCCGGCATTGGTCTTGACG
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--1073--10751Chr01:14111369..14111393 (25 bp)
TTGACGCCGGCATTGGTCTTGACGG
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--987--8931Chr01:14111368..14111392 (25 bp)
TGACGCCGGCATTGGTCTTGACGGC
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--421--8351Chr01:14111329..14111353 (25 bp)
GGCGGCGGTCCGGATCTCGCTAGCG
LOC_Os01g25050
OsAffx.23383.1.S1_x_at--198--9291Chr01:14111321..14111345 (25 bp)
TCCGGATCTCGCTAGCGGTGGAGGA
LOC_Os01g25050
Target Sequence 
TCCTTGGTCGCAGAGGCCAGCGGCTTGACGGTGCTCTTGACGCCGAGGGGGGGAGGTCGGGGAGGCCGGCGGCTTGACGG
TGCTCTTGACGCCGGCATTGGTCTTGACGGCGTGGAGAAGAGGCCGGCGGCGGTCCGGATCTCGCTAGCGGTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23383.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis