Browse Element(s) Details


OsAffx.23384.1.S1_at

Description tigr:9629.m02429
TID=OsAffx.23384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2507011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25070OsAffx.23384.1.S1_at11/111+14132470..14132748hypothetical protein
LOC_Os01g25080NANA1+14135454..14135777hypothetical protein
LOC_Os01g25090NANA1+14145776..14147765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25100OsAffx.11198.1.S1_at10/111+14149730..14151018Glutathione S-transferase IV, putative, expressed
LOC_Os01g25110Os.22583.1.A1_at3/111+14153724..14158296Clathrin adaptor complex small chain family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23384.1.S1_at--29--7391Chr01:14132509..14132533 (25 bp)
GTGAGGATCACCGATAGTGTGCCCC
LOC_Os01g25070
OsAffx.23384.1.S1_at--746--4871Chr01:14132559..14132583 (25 bp)
GTTCCGGGTGGTGGGCCTTGGAGCG
LOC_Os01g25070
OsAffx.23384.1.S1_at--91--3971Chr01:14132582..14132606 (25 bp)
CGGTGGATCCGAATCTGGTGACGAA
LOC_Os01g25070
OsAffx.23384.1.S1_at--696--7951Chr01:14132586..14132610 (25 bp)
GGATCCGAATCTGGTGACGAAGGCA
LOC_Os01g25070
OsAffx.23384.1.S1_at--100--4231Chr01:14132590..14132614 (25 bp)
CCGAATCTGGTGACGAAGGCAGCCG
LOC_Os01g25070
OsAffx.23384.1.S1_at--391--1931Chr01:14132619..14132643 (25 bp)
ACGGCCCACCGCTGGGAGAGCTCTG
LOC_Os01g25070
OsAffx.23384.1.S1_at--992--4171Chr01:14132623..14132647 (25 bp)
CCCACCGCTGGGAGAGCTCTGGTGC
LOC_Os01g25070
OsAffx.23384.1.S1_at--1029--5991Chr01:14132634..14132658 (25 bp)
GAGAGCTCTGGTGCGGGCTGCGGGT
LOC_Os01g25070
OsAffx.23384.1.S1_at--978--4651Chr01:14132646..14132670 (25 bp)
GCGGGCTGCGGGTGAAGGATCCATC
LOC_Os01g25070
OsAffx.23384.1.S1_at--352--5311Chr01:14132659..14132683 (25 bp)
GAAGGATCCATCAATGGAGCTTGGG
LOC_Os01g25070
OsAffx.23384.1.S1_at--185--5171Chr01:14132692..14132716 (25 bp)
GCAAGCTGTGGCGAGGCTAGGTATG
LOC_Os01g25070
Target Sequence 
GTGAGGATCACCGATAGTGTGCCCCCGCCCTCCCAGGTCTGGTGGCAGCAGTTCCGGGTGGTGGGCCTTGGAGCGGTGGA
TCCGAATCTGGTGACGAAGGCAGCCGGGTCACGGCCCACCGCTGGGAGAGCTCTGGTGCGGGCTGCGGGTGAAGGATCCA
TCAATGGAGCTTGGGGGAGAGGGGCAAGCTGTGGCGAGGCTAGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis