Browse Element(s) Details


OsAffx.23389.1.S1_at

Description gb:NM_193963.1
DB_XREF= gi:34915009
GEN=P0458A05.9
TID=OsAffx.23389.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458A05.9 (P0458A05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g252503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein
LOC_Os01g25250OsAffx.23389.1.S1_at3/111+14241816..14243387hypothetical protein
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23389.1.S1_at--54--10371Chr01:14243163..14243187 (25 bp)
TTTTTTGCACTTGCTGGAGCCATTC
LOC_Os01g25250
OsAffx.23389.1.S1_at--361--5691Chr01:14243189..14243213 (25 bp)
GACTCGCCGCGATGGAGAAACCGAA
LOC_Os01g25250
OsAffx.23389.1.S1_at--66--5311Chr01:14243349..14243373 (25 bp)
GAAGGTATCGGTGCCTTCCGCGAAG
LOC_Os01g25250
OsAffx.23389.1.S1_at--424--10671Chr01:14243408..14243432 (25 bp)
TTCCACCACCGCAGTTCGAGAATGT
NONE
OsAffx.23389.1.S1_at--1135--9351Chr01:14243423..14243447 (25 bp)
TCGAGAATGTTTTATGGATCCACTG
NONE
OsAffx.23389.1.S1_at--534--691Chr01:14243462..14243486 (25 bp)
ATGAGCAGCTCGTCTACAGCCATTC
NONE
OsAffx.23389.1.S1_at--766--111Chr01:14243483..14243507 (25 bp)
ATTCTCGAGCACTCAACGACATGCG
NONE
OsAffx.23389.1.S1_at--242--9711Chr01:14243495..14243519 (25 bp)
TCAACGACATGCGAAGCCACAGGTT
NONE
OsAffx.23389.1.S1_at--264--5431Chr01:14243507..14243531 (25 bp)
GAAGCCACAGGTTCCTGGGCAAGCA
NONE
OsAffx.23389.1.S1_at--996--7351Chr01:14243612..14243636 (25 bp)
GTGAACGACGCCTTGGTGACGACAA
NONE
OsAffx.23389.1.S1_at--433--2471Chr01:14243635..14243659 (25 bp)
AACACCATCCCTATTGCTATCGCTA
NONE
Target Sequence 
TTTTTTGCACTTGCTGGAGCCATTCCGACTCGCCGCGATGGAGAAACCGAAGGAGCGGCTGGCGGCGTGGATCTCCTCGC
GTGGCCGAGGATTTGCCGCCGCGACCAGCGCGGCCCCGCACTTGGCCACCCCACCGCCGCTGTCCGCCGTGAAGCTCTCC
TCCGCCCCAAATCATCTGCCGCCGATGAAGGTATCGGTGCCTTCCGCGAAGCTCTCGTCCCCTAGGCCTCCACCACTGGT
GCAAGTTCCACCACCGCAGTTCGAGAATGTTTTATGGATCCACTGTCGCCGCCGCCGCGATGAGCAGCTCGTCTACAGCC
ATTCTCGAGCACTCAACGACATGCGAAGCCACAGGTTCCTGGGCAAGCAGAGCGCCGGCACGCTCGGCTGTTGCGGCCAT
GCGCCGCCGCGCATCCCAGTCCCTCCGCCCCACCCCCACTGCCAACGGCGTGAACGACGCCTTGGTGACGACAACACCAT
CCCTATTGCTATCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis