Browse Element(s) Details


OsAffx.23412.1.S1_x_at

Description gb:NM_193818.1
DB_XREF= gi:34914719
GEN=P0560B06.25
TID=OsAffx.23412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0560B06.25 (P0560B06.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g269009/11hypothetical protein
LOC_Os01g271104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26884NANA1+15269794..15275432retrotransposon protein, putative, unclassified
LOC_Os01g26888NANA1+15279322..15281667retrotransposon protein, putative, unclassified
LOC_Os01g26892NANA1+15283424..15285631retrotransposon protein, putative, unclassified
LOC_Os01g26896OsAffx.11220.1.S1_at8/111+15289466..15290503hypothetical protein
LOC_Os01g26896OsAffx.11219.1.S1_at7/111+15289466..15290503hypothetical protein
LOC_Os01g26900OsAffx.23412.1.S1_at9/111+15297132..15298228hypothetical protein
LOC_Os01g26900OsAffx.23412.1.S1_x_at9/111+15297132..15298228hypothetical protein
LOC_Os01g26900OsAffx.23412.2.S1_at7/111+15297132..15298228hypothetical protein
LOC_Os01g26904Os.35465.1.S1_at8/111+15300090..15302365hypothetical protein
LOC_Os01g26908OsAffx.23413.2.S1_at9/111+15304168..15304481hypothetical protein
LOC_Os01g26908OsAffx.23413.1.S1_x_at1/111+15304168..15304481hypothetical protein
LOC_Os01g26912Os.31088.1.S1_at11/111+15305984..15306749Glutaredoxin-like family protein, expressed
LOC_Os01g26916Os.35344.3.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916Os.35344.18.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916OsAffx.22940.5.S1_x_at3/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23412.1.S1_x_at--1157--10732Chr01:15442737..15442761 (25 bp)
TTGAAGAGGACGTCGAGCGAGCCCT
NONE
OsAffx.23412.1.S1_x_at--1052--952Chr01:15442743..15442767 (25 bp)
AGGACGTCGAGCGAGCCCTGAGCTC
NONE
OsAffx.23412.1.S1_x_at--251--1672Chr01:15442756..15442780 (25 bp)
AGCCCTGAGCTCGTGGCGGCTGCAT
NONE
OsAffx.23412.1.S1_x_at--177--1812Chr01:15442787..15442811 (25 bp)
ACCCCTGAGTCACCTTGTGTGGAGA
NONE
OsAffx.23412.1.S1_x_at--942--3852Chr01:15442791..15442815 (25 bp)
CTGAGTCACCTTGTGTGGAGATTAT
NONE
OsAffx.23412.1.S1_x_at--757--9951Chr03:16858121..16858228 (25 bp)
TACCCACACGGCATGATATGGAGCG
NONE
OsAffx.23412.1.S1_x_at--76--3311NONE
CACACGGCATGATATGGAGCGACCT
NONE
OsAffx.23412.1.S1_x_at--900--6492Chr01:15443604..15443628 (25 bp)
GATATGGAGCGACCTTGCTCAACAA
LOC_Os01g27110
OsAffx.23412.1.S1_x_at--1043--10712Chr01:15443618..15443642 (25 bp)
TTGCTCAACAAGAAGCGGCGCGGCT
LOC_Os01g27110
OsAffx.23412.1.S1_x_at--334--7612Chr01:15443700..15443724 (25 bp)
GGGAAGAGCTGACACCAACACCCTC
LOC_Os01g27110
OsAffx.23412.1.S1_x_at--1048--8852Chr01:15443730..15443754 (25 bp)
TGATGCGCTCGCTAACGGTGTGCAA
LOC_Os01g27110
Target Sequence 
TTGAAGAGGACGTCGAGCGAGCCCTGAGCTCGTGGCGGCTGCATCTGGCCACCCCTGAGTCACCTTGTGTGGAGATTATG
GGTACCGCATACCCACACGGCATGATATGGAGCGACCTTGCTCAACAAGAAGCGGCGCGGCTAAGGGATGGATGGGTGTG
GAGGGGAGGCGGCAATTTGGGGAGGGGGAGGTGGGGATGGGGAAGAGCTGACACCAACACCCTCGTCACTGATGCGCTCG
CTAACGGTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23412.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis