Browse Element(s) Details


OsAffx.23413.1.S1_x_at

Description gb:NM_193820.1
DB_XREF= gi:34914723
GEN=P0560B06.27
TID=OsAffx.23413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0560B06.27 (P0560B06.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2713011/11hypothetical protein
LOC_Os01g269081/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23413.1.S1_x_at--264--8452Chr01:15449822..15449846 (25 bp)
TGGCCAGAAAGTCAGCATTTTGTAT
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--214--92Chr01:15448159..15448183 (25 bp)
ATTCCACTATCTGAATCTGCAGCTC
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--425--9012Chr01:15448148..15448172 (25 bp)
TGAATCTGCAGCTCGTGGAACTCTT
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--441--5072Chr01:15448141..15448165 (25 bp)
GCAGCTCGTGGAACTCTTCAGATGG
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--608--5452Chr01:15448070..15448155 (25 bp)
GAACTCTTCAGATGGAAACTAGCGA
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--994--4612Chr01:15448049..15448073 (25 bp)
GCGATGAAGCGCTGTTGAAGGCATT
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--137--932Chr01:15448031..15448055 (25 bp)
AGGCATTGGAGCAGGGCATCCTCAT
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--361--572Chr01:15448014..15448038 (25 bp)
ATCCTCATTGCCTGCAACAGTTCAG
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--867--2472Chr01:15447999..15448023 (25 bp)
AACAGTTCAGCAAAAGTTCCGGATG
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--45--9292Chr01:15447982..15448006 (25 bp)
TCCGGATGAACAACAAACCCACAGT
LOC_Os01g27130
OsAffx.23413.1.S1_x_at--1027--2592Chr01:15447967..15447991 (25 bp)
AACCCACAGTTTGGTCTCTAACGAG
LOC_Os01g27130
Target Sequence 
TGGCCAGAAAGTCAGCATTTTGTATGGATAAGGAGCATCTGAAAGAGGGGATCTTATCAAGAACAATTCCACTATCTGAA
TCTGCAGCTCGTGGAACTCTTCAGATGGAAACTAGCGATGAAGCGCTGTTGAAGGCATTGGAGCAGGGCATCCTCATTGC
CTGCAACAGTTCAGCAAAAGTTCCGGATGAACAACAAACCCACAGTTTGGTCTCTAACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23413.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis