Browse Element(s) Details


OsAffx.23413.2.S1_at

Description tigr:9629.m02590
TID=OsAffx.23413.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2713011/11hypothetical protein
LOC_Os01g269089/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23413.2.S1_at--601--5252Chr01:15449947..15449971 (25 bp)
GAATCTCACAAAAAGCAAGGTCCTC
LOC_Os01g27130
OsAffx.23413.2.S1_at--193--2412Chr01:15449938..15449962 (25 bp)
AAAAAGCAAGGTCCTCACACCTCAT
LOC_Os01g27130
OsAffx.23413.2.S1_at--1031--7252Chr01:15449928..15449952 (25 bp)
GTCCTCACACCTCATCAGATATGGA
LOC_Os01g27130
OsAffx.23413.2.S1_at--872--6012Chr01:15449837..15449929 (25 bp)
GAGAGGTTAGAGTACTGGCCAGAAA
LOC_Os01g27130
OsAffx.23413.2.S1_at--953--4792Chr01:15449788..15449812 (25 bp)
GCATCTGAAAGAGGGTAGGGATTCC
LOC_Os01g27130
OsAffx.23413.2.S1_at--15--7672Chr01:15449771..15449795 (25 bp)
GGGATTCCAGGCAAAGTGGGTATCA
LOC_Os01g27130
OsAffx.23413.2.S1_at--656--7492Chr01:15449756..15449780 (25 bp)
GTGGGTATCAAGAGATCTGCTATGT
LOC_Os01g27130
OsAffx.23413.2.S1_at--118--6052Chr01:15449745..15449769 (25 bp)
GAGATCTGCTATGTGGCAGCTTGTA
LOC_Os01g27130
OsAffx.23413.2.S1_at--770--7532Chr01:15449733..15449757 (25 bp)
GTGGCAGCTTGTAACTTGCTAGTGA
LOC_Os01g27130
OsAffx.23413.2.S1_at--1008--9071Chr01:15449518..15449718 (25 bp)
TGCTACACATGGTGGCATACTCAAG
LOC_Os01g27130
OsAffx.23413.2.S1_at--399--7732Chr01:15449508..15449531 (24 bp)
GGTGGCATACTCAAGATGAAGTGAT
LOC_Os01g27130
Target Sequence 
GAATCTCACAAAAAGCAAGGTCCTCACACCTCATCAGATATGGAGAGGTTAGAGTACTGGCCAGAAAGTCAGCATTTTGT
ATGGATAAGGAGCATCTGAAAGAGGGTAGGGATTCCAGGCAAAGTGGGTATCAAGAGATCTGCTATGTGGCAGCTTGTAA
CTTGCTAGTGAAAAGAAAGGAACAATGCTACACATGGTGGCATACTCAAGATGAAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23413.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis