Browse Element(s) Details


OsAffx.23442.1.S1_at

Description gb:NM_184574.1
DB_XREF= gi:34896237
GEN=P0676G08.28
TID=OsAffx.23442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0676G08.28 (P0676G08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2910011/11retrotransposon protein, putative, unclassified
LOC_Os12g324101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g268001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29050OsAffx.15648.1.S1_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29050OsAffx.22452.1.S1_x_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29060Os.48015.1.A1_x_at1/111+16594371..16595182retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_s_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_x_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.1.S1_x_at4/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29080OsAffx.10530.1.S1_at11/111+16610459..16611378retrotransposon protein, putative, unclassified
LOC_Os01g29090OsAffx.10529.1.S1_at11/111+16612056..16612451retrotransposon protein, putative, unclassified
LOC_Os01g29100OsAffx.23442.1.S1_at11/111+16612788..16615501retrotransposon protein, putative, unclassified
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific
LOC_Os01g29120NANA1+16638118..16638819retrotransposon, putative, centromere-specific
LOC_Os01g29130OsAffx.11252.1.S1_at11/111+16639649..16640294hypothetical protein
LOC_Os01g29130Os.17546.2.S1_x_at1/111+16639649..16640294hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23442.1.S1_at--79--6232Chr12:19522491..19522513 (22 bp)
GAGGCCGCTGCTGAGTGCACCCGAA
LOC_Os12g32410
OsAffx.23442.1.S1_at--1083--1771Chr01:16613417..16613441 (25 bp)
ACCGAGGCTACAGTGGCTCGTTGCG
LOC_Os01g29100
OsAffx.23442.1.S1_at--224--10531Chr01:16613341..16613365 (25 bp)
TTGCCAAACGCGAGGCCGAGGTTAA
LOC_Os01g29100
OsAffx.23442.1.S1_at--653--3931Chr01:16613142..16613166 (25 bp)
CGGCGATACCGATCTGGCCATCCAG
LOC_Os01g29100
OsAffx.23442.1.S1_at--656--2751Chr01:16613104..16613128 (25 bp)
AAGACACCCTCGCTGATATGGGACG
LOC_Os01g29100
OsAffx.23442.1.S1_at--247--1892Chr02:13452131..13452152 (22 bp)
ACGATGCCATCGAACGGCTGGAGCG
NONE
OsAffx.23442.1.S1_at--590--8651Chr01:16612969..16612993 (25 bp)
TGGGCATCTCCATGCGCTGGGACAA
LOC_Os01g29100
OsAffx.23442.1.S1_at--272--7631Chr01:16612951..16612975 (25 bp)
GGGACAAGAAGCTCCCATCCACAAG
LOC_Os01g29100
OsAffx.23442.1.S1_at--734--5091Chr01:16612922..16612946 (25 bp)
GCACTCGCACGACGGTTGGACAAGA
LOC_Os01g29100
OsAffx.23442.1.S1_at--766--8993Chr09:3112073..3112096 (24 bp)
TGAAGTCGTCATCGGCTTCCTTGGT
NONE
OsAffx.23442.1.S1_at--893--1311Chr01:16612819..16612843 (25 bp)
AGATGGAGCTTGTCCTCACGAGTCA
LOC_Os01g29100
Target Sequence 
GAGGCCGCTGCTGAGTGCACCCGAACCACCACCGCCACCGAGGCTACAGTGGCTCGTTGCGCGGAGGAGCTGTGGCTTCG
AGAGGAGGTGTGGTGGGAGCAGGACGCCGCGCTTGCCAAACGCGAGGCCGAGGTTAACCGCCGCGAGGCGTCTGAGCTGG
AGGCCAGGGAGAAGGAACTAGCGTCGCGTGGGCAGCCCGGCGATACCGATCTGGCCATCCAGCTCGCCACGGCCCAAGAC
ACCCTCGCTGATATGGGACGGCTGGTGCAGGACCAGGCTGGAGAGATCGCGGCCCTCCATCTCGCCAACGACATCGGGCC
CGGCCAACTCCACGATGCCATCGAACGGCTGGAGCGTGCGGGGCGCCAGGTGGGCATCTCCATGCGCTGGGACAAGAAGC
TCCCATCCACAAGGCCGGCACTCGCACGACGGTTGGACAAGATGGCGGCGGACCTGGAGAAGCTGGAGGAGGAGGTCGGC
GAGGCCGTGAAGTCGTCATCGGCTTCCTTGGTGCGGGCGGAGATGGAGCTTGTCCTCACGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis