Browse Element(s) Details


OsAffx.23454.1.S1_at

Description tigr:9629.m02869
TID=OsAffx.23454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2987010/11Multidrug resistance protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23454.1.S1_at--828--2331Chr01:17058650..17058674 (25 bp)
AAAGAAAGATCTCTCCTTCTCGCTT
LOC_Os01g29870
OsAffx.23454.1.S1_at--776--271Chr01:17058804..17058828 (25 bp)
ATATGGGCTTGTGATTCCGATCCGG
LOC_Os01g29870
OsAffx.23454.1.S1_at--698--1031Chr01:17058857..17058881 (25 bp)
AGGTCGTCGGTCGTCTTGAGAATGT
LOC_Os01g29870
OsAffx.23454.1.S1_at--615--7831Chr01:17058893..17058917 (25 bp)
GGTAATTTTGTCCATCTTCTTGTCA
LOC_Os01g29870
OsAffx.23454.1.S1_at--725--10551Chr01:17058909..17058933 (25 bp)
TTCTTGTCACATTCCTGAGCAGCTT
LOC_Os01g29870
OsAffx.23454.1.S1_at--694--10111Chr01:17059151..17059175 (25 bp)
TATGATGCCAAGCTGATCCTGGAGA
LOC_Os01g29870
OsAffx.23454.1.S1_at--456--2991Chr01:17059208..17059232 (25 bp)
AATGTCATATTCGTCGTGCTCATCG
LOC_Os01g29870
OsAffx.23454.1.S1_at--601--9091NONE
TGCTCATCGGCTTGCTAGCTTCAGG
NONE
OsAffx.23454.1.S1_at--644--10011Chr01:17059971..17059994 (24 bp)
TAGCTTCAGGTCAGGCATCTCCAAG
LOC_Os01g29870
OsAffx.23454.1.S1_at--193--6231Chr01:17060012..17060036 (25 bp)
GAGGCCAGGCTGCAGTATACAAGAT
LOC_Os01g29870
OsAffx.23454.1.S1_at--1041--331Chr01:17060073..17060555 (25 bp)
ATACAGCACCACAGCGTCTAATTTA
LOC_Os01g29870
Target Sequence 
AAAGAAAGATCTCTCCTTCTCGCTTGACAGATGGTGCGGAGACGGCGGCAAGCGGTGGGGCAGTGACGGGGACGATATGG
GCTTGTGATTCCGATCCGGTTGGGAGGTGACGACGATGACACCGGTGAGGTCGTCGGTCGTCTTGAGAATGTGTGACAAG
ATCGGTAATTTTGTCCATCTTCTTGTCACATTCCTGAGCAGCTTCGCAGTGGCCTTCGCGCAGCAGAACAGTTGCGTCAT
GAAGAGCACGTACAGCTCCAACGTTCCGGAGAACGTCGCAGCCGGCATGGCCATGGGCACGGTCATAGTGCTCCTCTTCT
GTGGCTACTCCCTGGGGATTTCTTATGATGCCAAGCTGATCCTGGAGAAGGGATATACATGCACCGGAGCACAAGTGATG
AATGTCATATTCGTCGTGCTCATCGGCTTGCTAGCTTCAGGTCAGGCATCTCCAAGCATGAGAGAGTTTGCAGGAGGCCA
GGCTGCAGTATACAAGATATTGGAAACAATCAACAGGGAACCTAAGATCGATGCATACAGCACCACAGCGTCTAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis