Browse Element(s) Details


OsAffx.23495.2.S1_s_at

Description tigr:9629.m03166
TID=OsAffx.23495.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3377011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23495.2.S1_s_at--908--531Chr01:18916932..18916956 (25 bp)
ATCGCCCGCCGATTCGCGAACGGGA
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--948--71Chr01:18916921..18916945 (25 bp)
ATTCGCGAACGGGAGCCGCGGATTC
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--135--4411Chr01:18916891..18916915 (25 bp)
GCCACGGCGTCTTCTGGAAGCTTCG
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--1025--4891Chr01:18916753..18916777 (25 bp)
GCTTGGGCGGTTTGGGCCCACCTAT
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--199--9291Chr01:18916727..18916751 (25 bp)
TCCGTAGCCGCATCGTGTGGAAAGA
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--1087--8191Chr01:18916688..18916712 (25 bp)
GGAATAACCTGGTCCGCGGAATACA
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--238--2171Chr01:18916666..18916690 (25 bp)
ACACCGGCCGCGTGGATGTGAGCAT
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--207--3511Chr01:18916639..18916663 (25 bp)
CATGTGGGCCATGCTGGGAGATCAT
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--571--3511Chr01:18916630..18916654 (25 bp)
CATGCTGGGAGATCATGGCCCACGT
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--166--1911Chr01:18916609..18916633 (25 bp)
ACGTGCCGGGTGTCTCATCGGGTCT
LOC_Os01g33770
OsAffx.23495.2.S1_s_at--1161--7151Chr01:18916598..18916622 (25 bp)
GTCTCATCGGGTCTTGTTGCGTGAC
LOC_Os01g33770
Target Sequence 
ATCGCCCGCCGATTCGCGAACGGGAGCCGCGGATTCGGGGCGCCACGGCGTCTTCTGGAAGCTTCGGCGAAGCGCGAGGG
CGAGGGCGAGGCGCGGAAGGCTGAAGAAATCCGGAGGGAAGGCGACGATGGCGCACAGCGAACGGGGACGGAGACGGCGA
AGCCAAAGGAAGGAGGGGGGCTTGGGCGGTTTGGGCCCACCTATTTCCGTAGCCGCATCGTGTGGAAAGAAAAAATTAAA
GTGGGGAATAACCTGGTCCGCGGAATACACCGGCCGCGTGGATGTGAGCATGACATGTGGGCCATGCTGGGAGATCATGG
CCCACGTGCCGGGTGTCTCATCGGGTCTTGTTGCGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23495.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis