Browse Element(s) Details


OsAffx.23502.4.S1_at

Description tigr:9639.m00935
TID=OsAffx.23502.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0990011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein
LOC_Os11g09870OsAffx.18770.1.S1_s_at11/1111+5280360..5280604hypothetical protein
LOC_Os11g09880NANA11+5285405..5285758hypothetical protein
LOC_Os11g09890OsAffx.30280.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.28492.1.S1_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.27810.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09900OsAffx.23502.4.S1_at11/1111+5291426..5294636hypothetical protein
LOC_Os11g09910NANA11+5296188..5297351hypothetical protein
LOC_Os11g09919OsAffx.19542.3.S1_x_at7/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919Os.31535.1.A1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919OsAffx.28530.1.S1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09928NANA11+5312395..5312639NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23502.4.S1_at--1050--4353Chr12:2541901..2541925 (25 bp)
CCACTGAAGGTTGCGGCTCGAGGCC
NONE
OsAffx.23502.4.S1_at--75--6233Chr11:5291588..5291612 (25 bp)
GAGGCCACCCGCATTAAGTCTTCTT
LOC_Os11g09900
OsAffx.23502.4.S1_at--710--3073Chr12:2541946..2541970 (25 bp)
AATCAGGCTTTATCAAATTGCTTGT
NONE
OsAffx.23502.4.S1_at--829--10713Chr12:2541963..2541986 (24 bp)
TTGCTTGTTAGATCAACTTTCTCCG
NONE
OsAffx.23502.4.S1_at--152--10793Chr12:2541967..2542365 (25 bp)
TTGTTAGATCAACTTTCTCCGACGC
NONE
OsAffx.23502.4.S1_at--1050--10431Chr11:5291538..5291562 (25 bp)
TTAGATCAACTTTCTCCGACGCCCT
LOC_Os11g09900
OsAffx.23502.4.S1_at--612--8011Chr11:5291492..5291516 (25 bp)
GGAGGGAGAAACACTAATCCTTGTG
LOC_Os11g09900
OsAffx.23502.4.S1_at--937--5531Chr11:5291485..5291509 (25 bp)
GAAACACTAATCCTTGTGGTCCTGG
LOC_Os11g09900
OsAffx.23502.4.S1_at--893--2131Chr11:5291482..5291506 (25 bp)
ACACTAATCCTTGTGGTCCTGGACA
LOC_Os11g09900
OsAffx.23502.4.S1_at--1009--3031Chr11:5291477..5291501 (25 bp)
AATCCTTGTGGTCCTGGACATCTGG
LOC_Os11g09900
OsAffx.23502.4.S1_at--677--10831Chr11:5291472..5291496 (25 bp)
TTGTGGTCCTGGACATCTGGAGGAA
LOC_Os11g09900
Target Sequence 
CCACTGAAGGTTGCGGCTCGAGGCCACCCGCATTAAGTCTTCTTCAATCAGGCTTTATCAAATTGCTTGTTAGATCAACT
TTCTCCGACGCCCTTCAAGGGAAGGAAGCCTCAAAGGAGGGAGAAACACTAATCCTTGTGGTCCTGGACATCTGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23502.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis