Browse Element(s) Details


OsAffx.23504.1.S1_at

Description tigr:9629.m03194
TID=OsAffx.23504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g340906/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g34090OsAffx.23504.1.S1_at6/111+19104699..19105034hypothetical protein
LOC_Os01g34100Os.51860.1.S1_at11/111+19107447..19108239expressed protein
LOC_Os01g34110NANA1+19109117..19109413hypothetical protein
LOC_Os01g34120OsAffx.11310.1.S1_at11/111+19118577..19118882hypothetical protein
LOC_Os01g34130NANA1+19122256..19122588retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23504.1.S1_at--988--3391Chr01:19105262..19105286 (25 bp)
CAGCTCGTCTTCATCGGAGCACATC
NONE
OsAffx.23504.1.S1_at--717--4011Chr01:19105257..19105281 (25 bp)
CGTCTTCATCGGAGCACATCCCGGG
NONE
OsAffx.23504.1.S1_at--560--7751Chr01:19105076..19105100 (25 bp)
GGTGAGTCCCTTACACCAACTGTCG
NONE
OsAffx.23504.1.S1_at--266--10491Chr01:19105066..19105090 (25 bp)
TTACACCAACTGTCGCCTCGGGAAT
NONE
OsAffx.23504.1.S1_at--913--4371Chr01:19105061..19105085 (25 bp)
CCAACTGTCGCCTCGGGAATGACGA
NONE
OsAffx.23504.1.S1_at--1009--10691Chr01:19104956..19104980 (25 bp)
TTGCGCTTGAACCATGCTGCCGGAA
LOC_Os01g34090
OsAffx.23504.1.S1_at--887--4871Chr01:19104952..19104976 (25 bp)
GCTTGAACCATGCTGCCGGAACGGC
LOC_Os01g34090
OsAffx.23504.1.S1_at--291--5771Chr01:19104884..19104908 (25 bp)
GACGTTGGCCGCAGCCGCAACTGCT
LOC_Os01g34090
OsAffx.23504.1.S1_at--520--2551Chr01:19104866..19104890 (25 bp)
AACTGCTCGTGGCACCGACTCGTGC
LOC_Os01g34090
OsAffx.23504.1.S1_at--18--7211Chr01:19104754..19104778 (25 bp)
GTCGTCGACACACTCGTGGCCGATG
LOC_Os01g34090
OsAffx.23504.1.S1_at--178--611Chr01:19104732..19104756 (25 bp)
ATGCGCTCGCCGTGGGTGGACAGCA
LOC_Os01g34090
Target Sequence 
CAGCTCGTCTTCATCGGAGCACATCCCGGGGCGATCCGCCGTCGAGATCGGGCGGCGGCCGGCGGGTGGGGGCAGCAAGA
GGAGGGGATGGATAAGAGCGACGTGCCGCCGCGAGACGACAAGAGAGGCGAAGCGCGGAAGAGCGGTGGAGAGGTCCGTG
GGTCCCCCTCATCCTTCCGCTCCTCCGGTGAGTCCCTTACACCAACTGTCGCCTCGGGAATGACGACGAGCCGCCTCAAC
AGCAGCTGCCCGATGGCGGCGCTCTTGGCGGCGCTCTTGGCGGCGTGCGACCGCGGGGTCCGCGCCTTGCGCTTGAACCA
TGCTGCCGGAACGGCCTCGTCACACCGCCCTGACCCCGATGGCGGCACCAGCGGCGGCGACGTTGGCCGCAGCCGCAACT
GCTCGTGGCACCGACTCGTGCGTGACCGTGGCGCAGCGGCAACAACGATGACTGCCGCGGCGGACGGTGGAGCAGACGAC
GACAACCGCGTGTGGTGGCCCAGATGTCGTCGTCGACACACTCGTGGCCGATGCGCTCGCCGTGGGTGGACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis