Browse Element(s) Details


OsAffx.23529.1.S1_at

Description tigr:9629.m03443
TID=OsAffx.23529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3649011/11hypothetical protein
LOC_Os04g258501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g176701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23529.1.S1_at--749--1691Chr01:20578345..20578369 (25 bp)
ACCAATGACAGGGACTTTGAGAAGT
LOC_Os01g36490
OsAffx.23529.1.S1_at--297--8913Chr11:9840074..9840094 (21 bp)
TGAGAAGTTCAAGTCCATGGTAAAG
LOC_Os11g17670
OsAffx.23529.1.S1_at--1162--5451Chr01:20578303..20578327 (25 bp)
GACTCAAAAGTGTTGCTTTACCCTG
LOC_Os01g36490
OsAffx.23529.1.S1_at--69--2331Chr01:20578297..20578321 (25 bp)
AAAGTGTTGCTTTACCCTGGTTGCA
LOC_Os01g36490
OsAffx.23529.1.S1_at--114--6611Chr01:20578292..20578316 (25 bp)
GTTGCTTTACCCTGGTTGCAAAAAG
LOC_Os01g36490
OsAffx.23529.1.S1_at--509--10411Chr01:20578286..20578310 (25 bp)
TTACCCTGGTTGCAAAAAGAAGCAC
LOC_Os01g36490
OsAffx.23529.1.S1_at--1111--2331Chr01:20578271..20578295 (25 bp)
AAAGAAGCACACTAAGTCGCATGTC
LOC_Os01g36490
OsAffx.23529.1.S1_at--887--1491Chr01:20578266..20578290 (25 bp)
AGCACACTAAGTCGCATGTCATCCT
LOC_Os01g36490
OsAffx.23529.1.S1_at--353--3311Chr01:20578262..20578286 (25 bp)
CACTAAGTCGCATGTCATCCTATTA
LOC_Os01g36490
OsAffx.23529.1.S1_at--1004--751Chr01:20578251..20578275 (25 bp)
ATGTCATCCTATTACTACTAAAGAT
LOC_Os01g36490
OsAffx.23529.1.S1_at--111--7891Chr01:20578213..20578237 (25 bp)
GGTTATACTAACAAAAGCTTCACAG
LOC_Os01g36490
Target Sequence 
ACCAATGACAGGGACTTTGAGAAGTTCAAGTCCATGGTAAAGGACTCAAAAGTGTTGCTTTACCCTGGTTGCAAAAAGAA
GCACACTAAGTCGCATGTCATCCTATTACTACTAAAGATGAAAGTACACAATGGTTATACTAACAAAAGCTTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis