Browse Element(s) Details


OsAffx.23567.1.S1_at

Description tigr:9629.m03696
TID=OsAffx.23567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3890011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein
LOC_Os01g38900OsAffx.23567.1.S1_at11/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_x_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38910OsAffx.23568.1.S1_at11/111+22174341..22174931hypothetical protein
LOC_Os01g38920NANA1+22178457..22179331retrotransposon protein, putative, unclassified
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23567.1.S1_at--443--6351Chr01:22165388..22165583 (25 bp)
GATGCGGATCATTTGGCTACATTGC
LOC_Os01g38900
OsAffx.23567.1.S1_at--158--5091Chr01:22165365..22165389 (25 bp)
GCACCTGAGGTGTTACTTACCGGCA
LOC_Os01g38900
OsAffx.23567.1.S1_at--407--5071Chr01:22165343..22165367 (25 bp)
GCACCTTCTCCGATAAGTCTGATGT
LOC_Os01g38900
OsAffx.23567.1.S1_at--667--1151Chr01:22165328..22165352 (25 bp)
AGTCTGATGTGTATAGCCTTGGCGT
LOC_Os01g38900
OsAffx.23567.1.S1_at--258--4311Chr01:22165312..22165336 (25 bp)
CCTTGGCGTGCTTATCTTGGAAATC
LOC_Os01g38900
OsAffx.23567.1.S1_at--1027--5611Chr01:22165279..22165303 (25 bp)
GACAAAGGTGAACTCTGCCTGCTTC
LOC_Os01g38900
OsAffx.23567.1.S1_at--556--1411Chr01:22164767..22165261 (25 bp)
AGACAACCTGTTGACCTGTGCATGG
LOC_Os01g38900
OsAffx.23567.1.S1_at--1053--931Chr01:22164717..22164741 (25 bp)
AGGACCTTGTGGACCGCTCGTTAAT
LOC_Os01g38900
OsAffx.23567.1.S1_at--142--9751Chr01:22164660..22164684 (25 bp)
TAATCAGGTACGTCCAGATGGCCCT
LOC_Os01g38900
OsAffx.23567.1.S1_at--61--1291Chr01:22164591..22164615 (25 bp)
AGATCGTCGCGATGCTGAGCAACAC
LOC_Os01g38900
OsAffx.23567.1.S1_at--535--1171Chr01:22164505..22164529 (25 bp)
AGTAATCATAGTGGCGCTGTCACCC
LOC_Os01g38900
Target Sequence 
GATGCGGATCATTTGGCTACATTGCACCTGAGGTGTTACTTACCGGCACCTTCTCCGATAAGTCTGATGTGTATAGCCTT
GGCGTGCTTATCTTGGAAATCATAAGTGGGACAAAGGTGAACTCTGCCTGCTTCTTTCAACAAGGAAGATCAGACAACCT
GTTGACCTGTGCATGGCAACTGTGGGATGCGCAAAGATACAAGGACCTTGTGGACCGCTCGTTAATATCAGCAGGAGAAA
ACATTGAGGACGCTGTGTTAATCAGGTACGTCCAGATGGCCCTTCTCTGCGTGCAGGCCAACCCCGAGCATCGGCCGAAC
ATAGACAAGATCGTCGCGATGCTGAGCAACACGGAGGCCCTGGACGTCCCTAAGGAACCCCCGGCATATTACAACGTACA
AGTTCCCACATCAAGTAATCATAGTGGCGCTGTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis