Browse Element(s) Details


OsAffx.23582.1.S1_x_at

Description tigr:9629.m03771
TID=OsAffx.23582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3959011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39560OsAffx.23580.1.S1_at11/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39560OsAffx.29724.3.S1_x_at1/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39570NANA1+22643104..22648558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39580Os.57500.1.S1_x_at3/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.57500.1.S1_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580OsAffx.940.1.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.51127.2.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39590OsAffx.23582.1.S1_x_at11/111+22659374..22660089hypothetical protein
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23582.1.S1_x_at--435--8071Chr01:22659812..22659925 (25 bp)
GGAGCACAAGTCCAGACGAAGATGT
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--101--2231Chr01:22659807..22659920 (25 bp)
ACAAGTCCAGACGAAGATGTGCTTG
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--1162--9211Chr01:22659802..22659824 (23 bp)
TCCAGACGAAGATGTGCTTGCCGGC
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--725--2791Chr01:22659732..22659756 (25 bp)
AAGAGGCGGCCGGACATCGCGGGAG
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--877--4691Chr01:22659727..22659751 (25 bp)
GCGGCCGGACATCGCGGGAGAGCTC
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--710--9211Chr01:22659624..22659648 (25 bp)
TCCAACTCCTCGGTGCTGTCGGCGC
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--182--8731Chr01:22659581..22659605 (25 bp)
TGTCGGCGCCGCTGCAGCGACGTGC
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--723--4051Chr01:22659540..22659564 (25 bp)
CGATCCGCGCGCAGAACTGGAGGAC
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--29--9311Chr01:22659537..22659561 (25 bp)
TCCGCGCGCAGAACTGGAGGACGAA
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--164--7591Chr01:22659473..22659497 (25 bp)
GGGCTCACGTGGGTCTTACAATTTT
LOC_Os01g39590
OsAffx.23582.1.S1_x_at--636--4831Chr01:22659471..22659495 (25 bp)
GCTCACGTGGGTCTTACAATTTTTT
LOC_Os01g39590
Target Sequence 
GGAGCACAAGTCCAGACGAAGATGTGCTTGCCGGCGGGGAGGCCGATCACCTGGTCGGAGGACGCGGCAGCGCGAAGCGG
AAGAGGCGGCCGGACATCGCGGGAGAGCTCCTCCTTGCGCCGGTGGTGATGAGCTCGCCGATGCGGTAGGTGTGGTGGAG
CGCCTTGGCCTTGTCGGAGTGGATGGCGTCCAACTCCTCGGTGCTGTCGGCGCCGGCGTTGATGAGGATGCTGTCGGCGC
CGCTGCAGCGACGTGCCGCCGTCGAGCCGACTCGATCCGCGCGCAGAACTGGAGGACGAAGAGTATAGAGATAAGAGTGG
AGAAAGAGGATGACATGTGGGGCTCACGTGGGTCTTACAATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23582.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis