Browse Element(s) Details


OsAffx.23642.1.S1_at

Description tigr:9629.m04159
TID=OsAffx.23642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4324010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43210Os.55650.1.A1_at6/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.21756.5.A1_x_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.52979.1.S1_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.7307.3.S1_x_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.22143.1.S1_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.4856.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.22646.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23642.1.S1_at--829--5571Chr01:25026383..25026407 (25 bp)
GAAAGGAAAGGATCACCCTGTGCAT
LOC_Os01g43240
OsAffx.23642.1.S1_at--509--2291Chr01:25026389..25026413 (25 bp)
AAAGGATCACCCTGTGCATGGGTCC
LOC_Os01g43240
OsAffx.23642.1.S1_at--358--1551Chr01:25026425..25026449 (25 bp)
AGCTACCATCCCTACCAGATAAAGG
LOC_Os01g43240
OsAffx.23642.1.S1_at--1161--711NONE
ATGTTAAGTGGATGGTCGGTGTACC
NONE
OsAffx.23642.1.S1_at--663--6211Chr01:25027733..25027757 (25 bp)
GATGGTCGGTGTACCAGTACGTTGA
LOC_Os01g43240
OsAffx.23642.1.S1_at--932--7431Chr01:25027741..25027765 (25 bp)
GTGTACCAGTACGTTGATCAAATGT
LOC_Os01g43240
OsAffx.23642.1.S1_at--809--251Chr01:25027757..25027781 (25 bp)
ATCAAATGTTGGCAATACGGGCACC
LOC_Os01g43240
OsAffx.23642.1.S1_at--586--5191Chr01:25027768..25027792 (25 bp)
GCAATACGGGCACCAGTGTTGGCCT
LOC_Os01g43240
OsAffx.23642.1.S1_at--1094--3451Chr01:25027781..25027805 (25 bp)
CAGTGTTGGCCTGGGAGCACCTGTA
LOC_Os01g43240
OsAffx.23642.1.S1_at--760--7631Chr01:25027793..25027817 (25 bp)
GGGAGCACCTGTATTGGTACCTCAA
LOC_Os01g43240
OsAffx.23642.1.S1_at--565--1771Chr01:25027799..25027823 (25 bp)
ACCTGTATTGGTACCTCAACATCAT
LOC_Os01g43240
Target Sequence 
GAAAGGAAAGGATCACCCTGTGCATGGGTCCCCAGCCTGCGCAGCTACCATCCCTACCAGATAAAGGAAAAGATGTTAAG
TGGATGGTCGGTGTACCAGTACGTTGATCAAATGTTGGCAATACGGGCACCAGTGTTGGCCTGGGAGCACCTGTATTGGT
ACCTCAACATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis