Browse Element(s) Details


OsAffx.23654.1.S1_at

Description gb:NM_192945.1
DB_XREF= gi:34912973
GEN=B1158C05.15
TID=OsAffx.23654.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1158C05.15 (B1158C05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g441608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g44140NANA1+25628529..25629251hypothetical protein
LOC_Os01g44150OsAffx.13786.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150OsAffx.22699.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_x_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44160OsAffx.23654.1.S1_at8/111+25639254..25639640hypothetical protein
LOC_Os01g44170Os.40235.1.S1_at11/111+25643963..25650348hypothetical protein
LOC_Os01g44170Os.25526.1.S1_at1/111+25643963..25650348hypothetical protein
LOC_Os01g44180Os.51948.1.S1_at2/111+25652950..25653553hypothetical protein
LOC_Os01g44190NANA1+25657787..25658107expressed protein
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23654.1.S1_at--271--2451Chr01:25639794..25639818 (25 bp)
AAAATCCAATCGATCACCATCGCGA
NONE
OsAffx.23654.1.S1_at--1068--371Chr01:25639782..25639806 (25 bp)
ATCACCATCGCGACGCTCCAAATGG
NONE
OsAffx.23654.1.S1_at--28--9351Chr01:25639775..25639799 (25 bp)
TCGCGACGCTCCAAATGGTGGCGGT
NONE
OsAffx.23654.1.S1_at--635--6371Chr01:25639550..25639574 (25 bp)
GATCCTCAGAGTTCTCCTCGATCTA
LOC_Os01g44160
OsAffx.23654.1.S1_at--949--9631Chr01:25639545..25639569 (25 bp)
TCAGAGTTCTCCTCGATCTACACCG
LOC_Os01g44160
OsAffx.23654.1.S1_at--795--9331Chr01:25639501..25639525 (25 bp)
TCGCCGTCGCCATAAGCAGAGAAGG
LOC_Os01g44160
OsAffx.23654.1.S1_at--880--4491Chr01:25639499..25639523 (25 bp)
GCCGTCGCCATAAGCAGAGAAGGTG
LOC_Os01g44160
OsAffx.23654.1.S1_at--719--6011Chr01:25639442..25639466 (25 bp)
GAGAGTAGCGCCGACCGACGGATGG
LOC_Os01g44160
OsAffx.23654.1.S1_at--1128--5571Chr01:25639401..25639425 (25 bp)
GAAATGGTGGCGATTGGGTGCAAAT
LOC_Os01g44160
OsAffx.23654.1.S1_at--241--3291Chr01:25639381..25639405 (25 bp)
CAAATGAAGTGGTGAGGAGCCACCC
LOC_Os01g44160
OsAffx.23654.1.S1_at--379--8891Chr01:25639369..25639393 (25 bp)
TGAGGAGCCACCCACTTGCCTTGTC
LOC_Os01g44160
Target Sequence 
AAAATCCAATCGATCACCATCGCGACGCTCCAAATGGTGGCGGTGGGGCAACAAGAAGGTAGTGGAAGGGAGANNANGAG
NANNGGGNANNNNNGNNNCNNNNCNNNGNCNNNNNNNNNCNNCNNNGNNNNNNCNNCNGATCCTCAGAGTTCTCCTCGAT
CTACACCGCCACGCTGCCTTGTCAAGGTCGCCGTCGCCATAAGCAGAGAAGGTGGAAGAAGAGAGCAGCGTCGGGGTAGA
GGGAGGGAGAGTAGCGCCGACCGACGGATGGGTGTGGAGGCGAAGGTGAAATGGTGGCGATTGGGTGCAAATGAAGTGGT
GAGGAGCCACCCACTTGCCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis