Browse Element(s) Details


OsAffx.23687.1.S1_at

Description tigr:9629.m04442
TID=OsAffx.23687.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4641011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23687.1.S1_at--533--9371Chr01:26742320..26742344 (25 bp)
TCGACGAGCCCGACTGCAAGTGGTT
LOC_Os01g46410
OsAffx.23687.1.S1_at--12--5791Chr01:26742318..26742342 (25 bp)
GACGAGCCCGACTGCAAGTGGTTCG
LOC_Os01g46410
OsAffx.23687.1.S1_at--497--8411Chr01:26742239..26742263 (25 bp)
GGCCGTCCCTGTTCTACGAGAACGG
LOC_Os01g46410
OsAffx.23687.1.S1_at--787--8791Chr01:26742230..26742254 (25 bp)
TGTTCTACGAGAACGGGAGGCTCGT
LOC_Os01g46410
OsAffx.23687.1.S1_at--118--9131Chr01:26742161..26742185 (25 bp)
TGCGGCACTCCCACCGGATGGCGTT
LOC_Os01g46410
OsAffx.23687.1.S1_at--285--9291Chr01:26742125..26742149 (25 bp)
TCCGGGCCATCAACGACATCAGGTT
LOC_Os01g46410
OsAffx.23687.1.S1_at--562--4431Chr01:26742120..26742144 (25 bp)
GCCATCAACGACATCAGGTTCAGGG
LOC_Os01g46410
OsAffx.23687.1.S1_at--278--8271Chr01:26741979..26742003 (25 bp)
GGCATGGACCTGGAATTCTACACGT
LOC_Os01g46410
OsAffx.23687.1.S1_at--902--8091Chr01:26741974..26741998 (25 bp)
GGACCTGGAATTCTACACGTCGCAG
LOC_Os01g46410
OsAffx.23687.1.S1_at--835--1631Chr01:26741816..26741840 (25 bp)
AGCGGGTGCTGTACAATGACTGCAT
LOC_Os01g46410
OsAffx.23687.1.S1_at--96--9131Chr01:26741810..26741834 (25 bp)
TGCTGTACAATGACTGCATCCACTG
LOC_Os01g46410
Target Sequence 
TCGACGAGCCCGACTGCAAGTGGTTCGCCCGCGTGGCGCGGTTCGACTACGTCATCTTCTCGGGGGCCAACTGGTTCACG
CGGCCGTCCCTGTTCTACGAGAACGGGAGGCTCGTCGGCGGCAGCTACGTGGCGCTCAACATCACCAGCGACCTGACGCT
GCGGCACTCCCACCGGATGGCGTTCCGGACGGCGCTCCGGGCCATCAACGACATCAGGTTCAGGGGGAAGGCGATCGTGC
GGACGCTGTCGCCGATGTCGCACTTCGAGGGCGGCGCGTGGGACAAGGGCGGCGACTGCCGGCGGACGCGGCCGTACAGG
GGGAACGAGACGGCCATGGGAGGCATGGACCTGGAATTCTACACGTCGCAGGTGGAGGAGTTCAGGGAGGCGCAGAGGGA
GGCGGCGGCGAACGGGGTGGACATGGTGCTCATGGACCCCACCGCCGCGATGCTGCTCCGGCCGGACGGCCACCCGAGCC
GGTACGGCCACTGGCCGGACGAGAAGCGGGTGCTGTACAATGACTGCATCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis