Browse Element(s) Details


OsAffx.23723.1.S1_at

Description gb:NM_192084.1
DB_XREF= gi:34911251
GEN=P0445E10.24
TID=OsAffx.23723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative anti-silencing factor 1-like protein (P0445E10.24), mRNA.
PROD=putative anti-silencing factor 1-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4915010/11Anti-silencing protein, ASF1-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0006886biological_processintracellular protein transport
GO:0045045biological_processsecretory pathway
GO:0016021cellular_componentintegral to membrane
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23723.1.S1_at--829--2891Chr01:28572484..28572508 (25 bp)
AAGGTTATTGATGCTTCTCTAGTCC
LOC_Os01g49150
OsAffx.23723.1.S1_at--1138--10211Chr01:28572479..28572503 (25 bp)
TATTGATGCTTCTCTAGTCCTCTCT
LOC_Os01g49150
OsAffx.23723.1.S1_at--1105--9491Chr01:28572457..28572481 (25 bp)
TCTCCTCTGTTGCTCTGCATAGCTA
LOC_Os01g49150
OsAffx.23723.1.S1_at--297--8811Chr01:28572450..28572474 (25 bp)
TGTTGCTCTGCATAGCTAGTCGGTA
LOC_Os01g49150
OsAffx.23723.1.S1_at--753--4811Chr01:28572446..28572470 (25 bp)
GCTCTGCATAGCTAGTCGGTACGTA
LOC_Os01g49150
OsAffx.23723.1.S1_at--135--10011Chr01:28572438..28572462 (25 bp)
TAGCTAGTCGGTACGTAGATATGCA
LOC_Os01g49150
OsAffx.23723.1.S1_at--902--3951Chr01:28572430..28572454 (25 bp)
CGGTACGTAGATATGCAAGGTGGTT
LOC_Os01g49150
OsAffx.23723.1.S1_at--980--7291Chr01:28572404..28572428 (25 bp)
GTGCGAGGAGCTTGTTCCTGCTTGC
LOC_Os01g49150
OsAffx.23723.1.S1_at--63--6711Chr01:28572391..28572415 (25 bp)
GTTCCTGCTTGCACTGTGCTTCAGA
LOC_Os01g49150
OsAffx.23723.1.S1_at--130--4931Chr01:28572388..28572409 (22 bp)
GCTTGCACTGTGCTTCAGAGATATC
LOC_Os01g49150
OsAffx.23723.1.S1_at--698--9031NONE
TGCACTGTGCTTCAGAGATATCTGG
NONE
Target Sequence 
AAGGTTATTGATGCTTCTCTAGTCCTCTCTCCTCTGTTGCTCTGCATAGCTAGTCGGTACGTAGATATGCAAGGTGGTTG
GTGCGAGGAGCTTGTTCCTGCTTGCACTGTGCTTCAGAGATATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis